RosBREED_snp_sweet_cherry_Pp5_07711329, RosBREED_snp_sweet_cherry_Pp5_07711329 (genetic_marker) Prunus avium

Marker Overview
NameRosBREED_snp_sweet_cherry_Pp5_07711329
AliasRosBREED_snp_sweet_5_07711329
ss490554014
rs271788607
Rsweet_5_07711329
dbSNP IDss490554014
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_sweet_cherry_Pp5_07711329
TypeSNP
SNP AllelesT/C
SpeciesPrunus avium
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rsweet_5_07711329Rsweet_5_07711329Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp5_07711329RosBREED_snp_sweet_cherry_Pp5_07711329Prunus aviummarker_locus
ss490554014ss490554014Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp5_07711329RosBREED_snp_sweet_cherry_Pp5_07711329-10.9Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-05-4Pav-HB-05-4Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-05-4_2Prunus aviumhaplotype
3Pav-HB-05-4_3Prunus aviumhaplotype
4Pav-HB-05-4_4Prunus aviumhaplotype
5Pav-HB-05-4_5Prunus aviumhaplotype
6Pav-HB-05-4_6Prunus aviumhaplotype
7Pav-HB-05-4_7Prunus aviumhaplotype
8Pav-HB-05-4_8Prunus aviumhaplotype
9Pav-HB-05-4_9Prunus aviumhaplotype
10Pav-HB-05-4_10Prunus aviumhaplotype
11Pav-HB-05-4_11Prunus aviumhaplotype
12Pav-HB-05-4_12Prunus aviumhaplotype
13Pav-HB-05-4_13Prunus aviumhaplotype
14Pav-HB-05-4_14Prunus aviumhaplotype
15Pav-HB-05-4_15Prunus aviumhaplotype
16Pav-HB-05-4_16Prunus aviumhaplotype
17Pav-HB-05-4_17Prunus aviumhaplotype
18Pav-HB-05-4_18Prunus aviumhaplotype
19Pav-HB-05-4_19Prunus aviumhaplotype
20Pav-HB-05-4_20Prunus aviumhaplotype
21Pav-HB-05-4_21Prunus aviumhaplotype
22Pav-HB-05-4_22Prunus aviumhaplotype
23Pav-HB-05-4_23Prunus aviumhaplotype
24Pav-HB-05-4_24Prunus aviumhaplotype
25Pav-HB-05-4_25Prunus aviumhaplotype
26Pav-HB-05-4_26Prunus aviumhaplotype
27Pav-HB-05-4_27Prunus aviumhaplotype
28Pav-HB-05-4_28Prunus aviumhaplotype
29Pav-HB-05-4_29Prunus aviumhaplotype
30Pav-HB-05-4_30Prunus aviumhaplotype
31Pav-HB-05-4_31Prunus aviumhaplotype
32Pav-HB-05-4_32Prunus aviumhaplotype
33Pav-HB-05-4_33Prunus aviumhaplotype
34Pav-HB-05-4_34Prunus aviumhaplotype
35Pav-HB-05-4_35Prunus aviumhaplotype
36Pav-HB-05-4_36Prunus aviumhaplotype
37Pav-HB-05-4_37Prunus aviumhaplotype
38Pav-HB-05-4_38Prunus aviumhaplotype
39Pav-HB-05-4_39Prunus aviumhaplotype
40Pav-HB-05-4_40Prunus aviumhaplotype
41Pav-HB-05-4_41Prunus aviumhaplotype
42Pav-HB-05-4_42Prunus aviumhaplotype
43Pav-HB-05-4_43Prunus aviumhaplotype
44Pav-HB-05-4_44Prunus aviumhaplotype
45Pav-HB-05-4_45Prunus aviumhaplotype
46Pav-HB-05-4_46Prunus aviumhaplotype
47Pav-HB-05-4_47Prunus aviumhaplotype
48Pav-HB-05-4_48Prunus aviumhaplotype
49Pav-HB-05-4_49Prunus aviumhaplotype
50Pav-HB-05-4_50Prunus aviumhaplotype
51Pav-HB-05-4_51Prunus aviumhaplotype
52Pav-HB-05-4_52Prunus aviumhaplotype
53Pav-HB-05-4_53Prunus aviumhaplotype
54Pav-HB-05-4_54Prunus aviumhaplotype
55Pav-HB-05-4_55Prunus aviumhaplotype
56Pav-HB-05-4_56Prunus aviumhaplotype
57Pav-HB-05-4_57Prunus aviumhaplotype
58Pav-HB-05-4_58Prunus aviumhaplotype
59Pav-HB-05-4_59Prunus aviumhaplotype
60Pav-HB-05-4_60Prunus aviumhaplotype
61Pav-HB-05-4_61Prunus aviumhaplotype
62Pav-HB-05-4_62Prunus aviumhaplotype
63Pav-HB-05-4_63Prunus aviumhaplotype
64Pav-HB-05-4_64Prunus aviumhaplotype
65Pav-HB-05-4_65Prunus aviumhaplotype
66Pav-HB-05-4_66Prunus aviumhaplotype
67Pav-HB-05-4_67Prunus aviumhaplotype
68Pav-HB-05-4_68Prunus aviumhaplotype
69Pav-HB-05-4_69Prunus aviumhaplotype
70Pav-HB-05-4_70Prunus aviumhaplotype
71Pav-HB-05-4_71Prunus aviumhaplotype
72Pav-HB-05-4_72Prunus aviumhaplotype
73Pav-HB-05-4_73Prunus aviumhaplotype
74Pav-HB-05-4_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015G5N/A35.45Rsweet_5_07711329View
2Prunus-TE-6K cherry SNP-estimate5N/A12.69RosBREED_snp_sweet_cherry_Pp5_07711329View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate5N/A25.1RosBREED_snp_sweet_cherry_Pp5_07711329View
4Sweet Cherry-C-F1LG5N/A20.49RosBREED_snp_sweet_cherry_Pp5_07711329View
5Sweet Cherry-VxC-F1LG5N/A23.79RosBREED_snp_sweet_cherry_Pp5_07711329View
6Sweet Cherry-CxC-F2LG5N/A26.01RosBREED_snp_sweet_cherry_Pp5_07711329View
7Sweet Cherry-BCxBC-F2LG5N/A30RosBREED_snp_sweet_cherry_Pp5_07711329View
8Sweet Cherry-RG-F1-2014G5N/A37.5RosBREED_snp_sweet_cherry_Pp5_07711329View
9Sweet Cherry-RosBREED-3.8K-20205N/A10.9RosBREED_snp_sweet_cherry_Pp5_07711329View
10Sweet Cherry-RosBREED-1.6K-20195N/A10.9RosBREED_snp_sweet_cherry_Pp5_07711329View
11Sweet Cherry-A-F15N/A17.96RosBREED_snp_sweet_cherry_Pp5_07711329View
12Sweet Cherry-AxS-F15N/A18.09RosBREED_snp_sweet_cherry_Pp5_07711329View
13Sweet Cherry-C-F1-6+9K_array5N/A26.31RosBREED_snp_sweet_cherry_Pp5_07711329View
14Sweet Cherry-VxC-F1-6+9K_array5N/A23.82RosBREED_snp_sweet_cherry_Pp5_07711329View
15Sweet Cherry-BTK-Black Tartarian-2013LG05N/A11ss490554014View
16Sweet Cherry-BTK-F1-2013LG05N/A10.9ss490554014View
17Sour Cherry-M172x25-F1LG5N/A10.9RosBREED_snp_sweet_cherry_Pp5_07711329View
18SourCherry-Montx25-F1LG5N/A10.9RosBREED_snp_sweet_cherry_Pp5_07711329View
19SourCherry-25x25-F1LG5N/A10.9RosBREED_snp_sweet_cherry_Pp5_07711329View
20Sour Cherry-US-F1LG5N/A10.9RosBREED_snp_sweet_cherry_Pp5_07711329View
21SourCherry-RE-F1LG5N/A10.9RosBREED_snp_sweet_cherry_Pp5_07711329View
Alignments
Feature NameTypeLocationAnalysis
scaffold_5 supercontig scaffold_5:7711329..7711329. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp05 chromosome Pp05:7712215..7712215. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr5 chromosome PAV_r1.0chr5:6155948..6155948. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)