RosBREED_snp_sweet_cherry_Pp5_10500237, RosBREED_snp_sweet_cherry_Pp5_10500237 (genetic_marker) Prunus avium

Marker Overview
NameRosBREED_snp_sweet_cherry_Pp5_10500237
AliasRosBREED_snp_sweet_5_10500237
ss490554134
rs271788647
Rsweet_5_10500237
dbSNP IDss490554134
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_sweet_cherry_Pp5_10500237
TypeSNP
SNP AllelesT/C
SpeciesPrunus avium
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

This genetic_marker is located in the following QTL feature(s):

Feature NameUnique NameSpeciesType
bloom dateqBD.M172x25-LG5.1Prunus cerasusQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rsweet_5_10500237Rsweet_5_10500237Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp5_10500237RosBREED_snp_sweet_cherry_Pp5_10500237Prunus aviummarker_locus
ss490554134ss490554134Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp5_10500237RosBREED_snp_sweet_cherry_Pp5_10500237-25.65Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
GR:5:8-13GR:5:8-13Prunus cerasushaplotype_block
Pav-HB-05-7Pav-HB-05-7Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
aGR:5:8-13_aPrunus aviumhaplotype
bGR:5:8-13_bPrunus aviumhaplotype
cGR:5:8-13_cPrunus aviumhaplotype
dGR:5:8-13_dPrunus aviumhaplotype
eGR:5:8-13_ePrunus aviumhaplotype
fGR:5:8-13_fPrunus aviumhaplotype
gGR:5:8-13_gPrunus aviumhaplotype
hGR:5:8-13_hPrunus aviumhaplotype
iGR:5:8-13_iPrunus aviumhaplotype
jGR:5:8-13_jPrunus aviumhaplotype
kGR:5:8-13_kPrunus aviumhaplotype
lGR:5:8-13_lPrunus aviumhaplotype
mGR:5:8-13_mPrunus aviumhaplotype
nGR:5:8-13_nPrunus aviumhaplotype
oGR:5:8-13_oPrunus aviumhaplotype
pGR:5:8-13_pPrunus aviumhaplotype
qGR:5:8-13_qPrunus aviumhaplotype
rGR:5:8-13_rPrunus aviumhaplotype
sGR:5:8-13_sPrunus aviumhaplotype
x1GR:5:8-13_x1Prunus aviumhaplotype
x2GR:5:8-13_x2Prunus aviumhaplotype
x3GR:5:8-13_x3Prunus aviumhaplotype
x4GR:5:8-13_x4Prunus aviumhaplotype
x5GR:5:8-13_x5Prunus aviumhaplotype
x6GR:5:8-13_x6Prunus aviumhaplotype
x7GR:5:8-13_x7Prunus aviumhaplotype
x8GR:5:8-13_x8Prunus aviumhaplotype
d1GR:5:8-13_d1Prunus aviumhaplotype
d2GR:5:8-13_d2Prunus aviumhaplotype
d3GR:5:8-13_d3Prunus aviumhaplotype
d4GR:5:8-13_d4Prunus aviumhaplotype
1'GR:5:8-13_1'Prunus aviumhaplotype
4GR:5:8-13_4Prunus aviumhaplotype
6GR:5:8-13_6Prunus aviumhaplotype
13'GR:5:8-13_13'Prunus aviumhaplotype
13mGR:5:8-13_13mPrunus aviumhaplotype
14GR:5:8-13_14Prunus aviumhaplotype
16GR:5:8-13_16Prunus aviumhaplotype
34GR:5:8-13_34Prunus aviumhaplotype
35GR:5:8-13_35Prunus aviumhaplotype
36aGR:5:8-13_36aPrunus aviumhaplotype
36bGR:5:8-13_36bPrunus aviumhaplotype
36b2GR:5:8-13_36b2Prunus aviumhaplotype
2Pav-HB-05-7_2Prunus aviumhaplotype
3Pav-HB-05-7_3Prunus aviumhaplotype
4Pav-HB-05-7_4Prunus aviumhaplotype
5Pav-HB-05-7_5Prunus aviumhaplotype
6Pav-HB-05-7_6Prunus aviumhaplotype
7Pav-HB-05-7_7Prunus aviumhaplotype
8Pav-HB-05-7_8Prunus aviumhaplotype
9Pav-HB-05-7_9Prunus aviumhaplotype
10Pav-HB-05-7_10Prunus aviumhaplotype
11Pav-HB-05-7_11Prunus aviumhaplotype
12Pav-HB-05-7_12Prunus aviumhaplotype
13Pav-HB-05-7_13Prunus aviumhaplotype
14Pav-HB-05-7_14Prunus aviumhaplotype
15Pav-HB-05-7_15Prunus aviumhaplotype
16Pav-HB-05-7_16Prunus aviumhaplotype
17Pav-HB-05-7_17Prunus aviumhaplotype
18Pav-HB-05-7_18Prunus aviumhaplotype
19Pav-HB-05-7_19Prunus aviumhaplotype
20Pav-HB-05-7_20Prunus aviumhaplotype
21Pav-HB-05-7_21Prunus aviumhaplotype
22Pav-HB-05-7_22Prunus aviumhaplotype
23Pav-HB-05-7_23Prunus aviumhaplotype
24Pav-HB-05-7_24Prunus aviumhaplotype
25Pav-HB-05-7_25Prunus aviumhaplotype
26Pav-HB-05-7_26Prunus aviumhaplotype
27Pav-HB-05-7_27Prunus aviumhaplotype
28Pav-HB-05-7_28Prunus aviumhaplotype
29Pav-HB-05-7_29Prunus aviumhaplotype
30Pav-HB-05-7_30Prunus aviumhaplotype
31Pav-HB-05-7_31Prunus aviumhaplotype
32Pav-HB-05-7_32Prunus aviumhaplotype
33Pav-HB-05-7_33Prunus aviumhaplotype
34Pav-HB-05-7_34Prunus aviumhaplotype
35Pav-HB-05-7_35Prunus aviumhaplotype
36Pav-HB-05-7_36Prunus aviumhaplotype
37Pav-HB-05-7_37Prunus aviumhaplotype
38Pav-HB-05-7_38Prunus aviumhaplotype
39Pav-HB-05-7_39Prunus aviumhaplotype
40Pav-HB-05-7_40Prunus aviumhaplotype
41Pav-HB-05-7_41Prunus aviumhaplotype
42Pav-HB-05-7_42Prunus aviumhaplotype
43Pav-HB-05-7_43Prunus aviumhaplotype
44Pav-HB-05-7_44Prunus aviumhaplotype
45Pav-HB-05-7_45Prunus aviumhaplotype
46Pav-HB-05-7_46Prunus aviumhaplotype
47Pav-HB-05-7_47Prunus aviumhaplotype
48Pav-HB-05-7_48Prunus aviumhaplotype
49Pav-HB-05-7_49Prunus aviumhaplotype
50Pav-HB-05-7_50Prunus aviumhaplotype
51Pav-HB-05-7_51Prunus aviumhaplotype
52Pav-HB-05-7_52Prunus aviumhaplotype
53Pav-HB-05-7_53Prunus aviumhaplotype
54Pav-HB-05-7_54Prunus aviumhaplotype
55Pav-HB-05-7_55Prunus aviumhaplotype
56Pav-HB-05-7_56Prunus aviumhaplotype
57Pav-HB-05-7_57Prunus aviumhaplotype
58Pav-HB-05-7_58Prunus aviumhaplotype
59Pav-HB-05-7_59Prunus aviumhaplotype
60Pav-HB-05-7_60Prunus aviumhaplotype
61Pav-HB-05-7_61Prunus aviumhaplotype
62Pav-HB-05-7_62Prunus aviumhaplotype
63Pav-HB-05-7_63Prunus aviumhaplotype
64Pav-HB-05-7_64Prunus aviumhaplotype
65Pav-HB-05-7_65Prunus aviumhaplotype
66Pav-HB-05-7_66Prunus aviumhaplotype
67Pav-HB-05-7_67Prunus aviumhaplotype
68Pav-HB-05-7_68Prunus aviumhaplotype
69Pav-HB-05-7_69Prunus aviumhaplotype
70Pav-HB-05-7_70Prunus aviumhaplotype
71Pav-HB-05-7_71Prunus aviumhaplotype
72Pav-HB-05-7_72Prunus aviumhaplotype
73Pav-HB-05-7_73Prunus aviumhaplotype
74Pav-HB-05-7_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RL-F1-2015L5N/A25.61Rsweet_5_10500237View
2Prunus-TE-6K cherry SNP-estimate5N/A20.09RosBREED_snp_sweet_cherry_Pp5_10500237View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate5N/A35.97RosBREED_snp_sweet_cherry_Pp5_10500237View
4Sweet Cherry-V-F1LG5N/A35.27RosBREED_snp_sweet_cherry_Pp5_10500237View
5Sweet Cherry-VxC-F1LG5N/A32.41RosBREED_snp_sweet_cherry_Pp5_10500237View
6Sweet Cherry-BCxBC-F2LG5N/A39.51RosBREED_snp_sweet_cherry_Pp5_10500237View
7Sweet Cherry-RL-F1-2014L5N/A27.2RosBREED_snp_sweet_cherry_Pp5_10500237View
8Sweet Cherry-RosBREED-3.8K-20205N/A25.65RosBREED_snp_sweet_cherry_Pp5_10500237View
9Sweet Cherry-RosBREED-1.6K-20195N/A25.65RosBREED_snp_sweet_cherry_Pp5_10500237View
10Sweet Cherry-V-F1-6+9K_array5N/A29.11RosBREED_snp_sweet_cherry_Pp5_10500237View
11Sweet Cherry-VxC-F1-6+9K_array5N/A31.93RosBREED_snp_sweet_cherry_Pp5_10500237View
12Sweet Cherry-RL-Lapins-2013LG05N/A25.4ss490554134View
13Sweet Cherry-BTK-F1-2013LG05N/A25.5ss490554134View
14Sweet Cherry-RL-F1-2013LG05N/A25.6ss490554134View
15Sour Cherry-M172x25-F1LG5N/A25.65RosBREED_snp_sweet_cherry_Pp5_10500237View
16SourCherry-Montx25-F1LG5N/A25.65RosBREED_snp_sweet_cherry_Pp5_10500237View
17SourCherry-RE-F1LG5N/A25.65RosBREED_snp_sweet_cherry_Pp5_10500237View
Alignments
Feature NameTypeLocationAnalysis
scaffold_5 supercontig scaffold_5:10500237..10500237. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp05 chromosome Pp05:10498528..10498528. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr5 chromosome PAV_r1.0chr5:8124518..8124518. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)