RosBREED_snp_sweet_cherry_Pp5_10734088, RosBREED_snp_sweet_cherry_Pp5_10734088 (genetic_marker) Prunus avium

Marker Overview
NameRosBREED_snp_sweet_cherry_Pp5_10734088
AliasRosBREED_snp_sweet_5_10734088
ss490554144
rs271788650
Rsweet_5_10734088
dbSNP IDss490554144
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_sweet_cherry_Pp5_10734088
TypeSNP
SNP AllelesA/G
SpeciesPrunus avium
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rsweet_5_10734088Rsweet_5_10734088Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp5_10734088RosBREED_snp_sweet_cherry_Pp5_10734088Prunus aviummarker_locus
ss490554144ss490554144Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-05-7Pav-HB-05-7Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-05-7_2Prunus aviumhaplotype
3Pav-HB-05-7_3Prunus aviumhaplotype
4Pav-HB-05-7_4Prunus aviumhaplotype
5Pav-HB-05-7_5Prunus aviumhaplotype
6Pav-HB-05-7_6Prunus aviumhaplotype
7Pav-HB-05-7_7Prunus aviumhaplotype
8Pav-HB-05-7_8Prunus aviumhaplotype
9Pav-HB-05-7_9Prunus aviumhaplotype
10Pav-HB-05-7_10Prunus aviumhaplotype
11Pav-HB-05-7_11Prunus aviumhaplotype
12Pav-HB-05-7_12Prunus aviumhaplotype
13Pav-HB-05-7_13Prunus aviumhaplotype
14Pav-HB-05-7_14Prunus aviumhaplotype
15Pav-HB-05-7_15Prunus aviumhaplotype
16Pav-HB-05-7_16Prunus aviumhaplotype
17Pav-HB-05-7_17Prunus aviumhaplotype
18Pav-HB-05-7_18Prunus aviumhaplotype
19Pav-HB-05-7_19Prunus aviumhaplotype
20Pav-HB-05-7_20Prunus aviumhaplotype
21Pav-HB-05-7_21Prunus aviumhaplotype
22Pav-HB-05-7_22Prunus aviumhaplotype
23Pav-HB-05-7_23Prunus aviumhaplotype
24Pav-HB-05-7_24Prunus aviumhaplotype
25Pav-HB-05-7_25Prunus aviumhaplotype
26Pav-HB-05-7_26Prunus aviumhaplotype
27Pav-HB-05-7_27Prunus aviumhaplotype
28Pav-HB-05-7_28Prunus aviumhaplotype
29Pav-HB-05-7_29Prunus aviumhaplotype
30Pav-HB-05-7_30Prunus aviumhaplotype
31Pav-HB-05-7_31Prunus aviumhaplotype
32Pav-HB-05-7_32Prunus aviumhaplotype
33Pav-HB-05-7_33Prunus aviumhaplotype
34Pav-HB-05-7_34Prunus aviumhaplotype
35Pav-HB-05-7_35Prunus aviumhaplotype
36Pav-HB-05-7_36Prunus aviumhaplotype
37Pav-HB-05-7_37Prunus aviumhaplotype
38Pav-HB-05-7_38Prunus aviumhaplotype
39Pav-HB-05-7_39Prunus aviumhaplotype
40Pav-HB-05-7_40Prunus aviumhaplotype
41Pav-HB-05-7_41Prunus aviumhaplotype
42Pav-HB-05-7_42Prunus aviumhaplotype
43Pav-HB-05-7_43Prunus aviumhaplotype
44Pav-HB-05-7_44Prunus aviumhaplotype
45Pav-HB-05-7_45Prunus aviumhaplotype
46Pav-HB-05-7_46Prunus aviumhaplotype
47Pav-HB-05-7_47Prunus aviumhaplotype
48Pav-HB-05-7_48Prunus aviumhaplotype
49Pav-HB-05-7_49Prunus aviumhaplotype
50Pav-HB-05-7_50Prunus aviumhaplotype
51Pav-HB-05-7_51Prunus aviumhaplotype
52Pav-HB-05-7_52Prunus aviumhaplotype
53Pav-HB-05-7_53Prunus aviumhaplotype
54Pav-HB-05-7_54Prunus aviumhaplotype
55Pav-HB-05-7_55Prunus aviumhaplotype
56Pav-HB-05-7_56Prunus aviumhaplotype
57Pav-HB-05-7_57Prunus aviumhaplotype
58Pav-HB-05-7_58Prunus aviumhaplotype
59Pav-HB-05-7_59Prunus aviumhaplotype
60Pav-HB-05-7_60Prunus aviumhaplotype
61Pav-HB-05-7_61Prunus aviumhaplotype
62Pav-HB-05-7_62Prunus aviumhaplotype
63Pav-HB-05-7_63Prunus aviumhaplotype
64Pav-HB-05-7_64Prunus aviumhaplotype
65Pav-HB-05-7_65Prunus aviumhaplotype
66Pav-HB-05-7_66Prunus aviumhaplotype
67Pav-HB-05-7_67Prunus aviumhaplotype
68Pav-HB-05-7_68Prunus aviumhaplotype
69Pav-HB-05-7_69Prunus aviumhaplotype
70Pav-HB-05-7_70Prunus aviumhaplotype
71Pav-HB-05-7_71Prunus aviumhaplotype
72Pav-HB-05-7_72Prunus aviumhaplotype
73Pav-HB-05-7_73Prunus aviumhaplotype
74Pav-HB-05-7_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015R5N/A33.94Rsweet_5_10734088View
2Prunus-TE-6K cherry SNP-estimate5N/A20.59RosBREED_snp_sweet_cherry_Pp5_10734088View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate5N/A37.38RosBREED_snp_sweet_cherry_Pp5_10734088View
4Sweet Cherry-RG-F1-2014R5N/A35.6RosBREED_snp_sweet_cherry_Pp5_10734088View
5Sweet Cherry-RosBREED-3.8K-20205N/A26.49RosBREED_snp_sweet_cherry_Pp5_10734088View
6Sweet Cherry-RosBREED-1.6K-20195N/A26.49RosBREED_snp_sweet_cherry_Pp5_10734088View
7Sweet Cherry-BTK-Kordia-2013LG05N/A19.3ss490554144View
8Sweet Cherry-BTK-F1-2013LG05N/A27.7ss490554144View
Alignments
Feature NameTypeLocationAnalysis
scaffold_5 supercontig scaffold_5:10734088..10734088. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp05 chromosome Pp05:10732326..10732326. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr5 chromosome PAV_r1.0chr5:8281056..8281056. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)