RosCOS1276-211_snp_sweet_cherry_Pp2_18681519, RosCOS1276-211_snp_sweet_cherry_Pp2_18681519 (genetic_marker) Prunus avium

Marker Overview
NameRosCOS1276-211_snp_sweet_cherry_Pp2_18681519
AliasRosCOS1276-211_snp_sweet_2_18681519
ss490558999
rs271790259
R1276-211_2_18681519
dbSNP IDss490558999
SNP Array ID
IRSC 6K SNP array for cherry:RosCOS1276-211_snp_sweet_cherry_Pp2_18681519
TypeSNP
SNP AllelesT/C
SpeciesPrunus avium
PolymorphismP_ RosCOS1276-211_snp_sweet_cherry_Pp2_18681519
Publication[view all]
Associated WithROSC_FMLY_CSA1_1276
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

This genetic_marker is associated with the following contig feature(s):

Feature NameUnique NameSpeciesType
ROSC_FMLY_CSA1_1276ROSC_FMLY_CSA1_1276Rosaceae Family Genera sp.contig


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
R1276-211_2_18681519R1276-211_2_18681519Prunus aviummarker_locus
RosCOS1276-211_snp_sweet_cherry_Pp2_18681519RosCOS1276-211_snp_sweet_cherry_Pp2_18681519Prunus aviummarker_locus
ss490558999ss490558999Prunus aviummarker_locus
RosCOS1276-211_snp_sweet_cherry_Pp2_18681519RosCOS1276-211_snp_sweet_cherry_Pp2_18681519-44.78Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-02-12Pav-HB-02-12Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-02-12_2Prunus aviumhaplotype
3Pav-HB-02-12_3Prunus aviumhaplotype
4Pav-HB-02-12_4Prunus aviumhaplotype
5Pav-HB-02-12_5Prunus aviumhaplotype
6Pav-HB-02-12_6Prunus aviumhaplotype
7Pav-HB-02-12_7Prunus aviumhaplotype
8Pav-HB-02-12_8Prunus aviumhaplotype
9Pav-HB-02-12_9Prunus aviumhaplotype
10Pav-HB-02-12_10Prunus aviumhaplotype
11Pav-HB-02-12_11Prunus aviumhaplotype
12Pav-HB-02-12_12Prunus aviumhaplotype
13Pav-HB-02-12_13Prunus aviumhaplotype
14Pav-HB-02-12_14Prunus aviumhaplotype
15Pav-HB-02-12_15Prunus aviumhaplotype
16Pav-HB-02-12_16Prunus aviumhaplotype
17Pav-HB-02-12_17Prunus aviumhaplotype
18Pav-HB-02-12_18Prunus aviumhaplotype
19Pav-HB-02-12_19Prunus aviumhaplotype
20Pav-HB-02-12_20Prunus aviumhaplotype
21Pav-HB-02-12_21Prunus aviumhaplotype
22Pav-HB-02-12_22Prunus aviumhaplotype
23Pav-HB-02-12_23Prunus aviumhaplotype
24Pav-HB-02-12_24Prunus aviumhaplotype
25Pav-HB-02-12_25Prunus aviumhaplotype
26Pav-HB-02-12_26Prunus aviumhaplotype
27Pav-HB-02-12_27Prunus aviumhaplotype
28Pav-HB-02-12_28Prunus aviumhaplotype
29Pav-HB-02-12_29Prunus aviumhaplotype
30Pav-HB-02-12_30Prunus aviumhaplotype
31Pav-HB-02-12_31Prunus aviumhaplotype
32Pav-HB-02-12_32Prunus aviumhaplotype
33Pav-HB-02-12_33Prunus aviumhaplotype
34Pav-HB-02-12_34Prunus aviumhaplotype
35Pav-HB-02-12_35Prunus aviumhaplotype
36Pav-HB-02-12_36Prunus aviumhaplotype
37Pav-HB-02-12_37Prunus aviumhaplotype
38Pav-HB-02-12_38Prunus aviumhaplotype
39Pav-HB-02-12_39Prunus aviumhaplotype
40Pav-HB-02-12_40Prunus aviumhaplotype
41Pav-HB-02-12_41Prunus aviumhaplotype
42Pav-HB-02-12_42Prunus aviumhaplotype
43Pav-HB-02-12_43Prunus aviumhaplotype
44Pav-HB-02-12_44Prunus aviumhaplotype
45Pav-HB-02-12_45Prunus aviumhaplotype
46Pav-HB-02-12_46Prunus aviumhaplotype
47Pav-HB-02-12_47Prunus aviumhaplotype
48Pav-HB-02-12_48Prunus aviumhaplotype
49Pav-HB-02-12_49Prunus aviumhaplotype
50Pav-HB-02-12_50Prunus aviumhaplotype
51Pav-HB-02-12_51Prunus aviumhaplotype
52Pav-HB-02-12_52Prunus aviumhaplotype
53Pav-HB-02-12_53Prunus aviumhaplotype
54Pav-HB-02-12_54Prunus aviumhaplotype
55Pav-HB-02-12_55Prunus aviumhaplotype
56Pav-HB-02-12_56Prunus aviumhaplotype
57Pav-HB-02-12_57Prunus aviumhaplotype
58Pav-HB-02-12_58Prunus aviumhaplotype
59Pav-HB-02-12_59Prunus aviumhaplotype
60Pav-HB-02-12_60Prunus aviumhaplotype
61Pav-HB-02-12_61Prunus aviumhaplotype
62Pav-HB-02-12_62Prunus aviumhaplotype
63Pav-HB-02-12_63Prunus aviumhaplotype
64Pav-HB-02-12_64Prunus aviumhaplotype
65Pav-HB-02-12_65Prunus aviumhaplotype
66Pav-HB-02-12_66Prunus aviumhaplotype
67Pav-HB-02-12_67Prunus aviumhaplotype
68Pav-HB-02-12_68Prunus aviumhaplotype
69Pav-HB-02-12_69Prunus aviumhaplotype
70Pav-HB-02-12_70Prunus aviumhaplotype
71Pav-HB-02-12_71Prunus aviumhaplotype
72Pav-HB-02-12_72Prunus aviumhaplotype
73Pav-HB-02-12_73Prunus aviumhaplotype
74Pav-HB-02-12_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015R2N/A37.89R1276-211_2_18681519View
2Sweet Cherry-RL-F1-2015R2N/A43.5R1276-211_2_18681519View
3Prunus-TE-6K cherry SNP-estimate2N/A25.75RosCOS1276-211_snp_sweet_cherry_Pp2_18681519View
4sweet cherry-consensus-map-2012-6K cherry SNP-estimate2N/A28.59RosCOS1276-211_snp_sweet_cherry_Pp2_18681519View
5Sweet Cherry-C-F1LG2N/A40.81RosCOS1276-211_snp_sweet_cherry_Pp2_18681519View
6Sweet Cherry-VxC-F1LG2N/A46.28RosCOS1276-211_snp_sweet_cherry_Pp2_18681519View
7Sweet Cherry-CxC-F2LG2N/A48.96RosCOS1276-211_snp_sweet_cherry_Pp2_18681519View
8Sweet Cherry-RosBREED-1.6K-20192N/A44.78RosCOS1276-211_snp_sweet_cherry_Pp2_18681519View
9Sweet Cherry-RosBREED-3.8K-20202N/A45.04RosCOS1276-211_snp_sweet_cherry_Pp2_18681519View
10Sweet Cherry-C-F1-6+9K_array2N/A42.42RosCOS1276-211_snp_sweet_cherry_Pp2_18681519View
11Sweet Cherry-VxC-F1-6+9K_array2N/A45.31RosCOS1276-211_snp_sweet_cherry_Pp2_18681519View
12Sweet Cherry-BTK-Kordia-2013LG02N/A38.8ss490558999View
13Sweet Cherry-RL-Regina-2013LG02N/A43.1ss490558999View
14Sweet Cherry-BTK-F1-2013LG02N/A39.8ss490558999View
15Sweet Cherry-RL-F1-2013LG02N/A55.9ss490558999View
16Sweet Cherry-QTL-HotSpot-Chr2-2017Chr02N/A44.8ss490558999View
17Sour Cherry-M172x25-F1LG2N/A44.78RosCOS1276-211_snp_sweet_cherry_Pp2_18681519View
Alignments
Feature NameTypeLocationAnalysis
scaffold_2 supercontig scaffold_2:18681519..18681519. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp02 chromosome Pp02:22257800..22257800. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)