RosBREED_snp_sweet_cherry_Pp1_31301016, RosBREED_snp_sweet_cherry_Pp1_31301016 (genetic_marker) Prunus avium

Marker Overview
NameRosBREED_snp_sweet_cherry_Pp1_31301016
AliasRosBREED_snp_sweet_1_31301016
ss490547271
rs271786709
Rsweet_1_31301016
dbSNP IDss490547271
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_sweet_cherry_Pp1_31301016
TypeSNP
SNP AllelesA/C
SpeciesPrunus avium
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rsweet_1_31301016Rsweet_1_31301016Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp1_31301016RosBREED_snp_sweet_cherry_Pp1_31301016Prunus aviummarker_locus
ss490547271ss490547271Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-01-25Pav-HB-01-25Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-01-25_2Prunus aviumhaplotype
3Pav-HB-01-25_3Prunus aviumhaplotype
4Pav-HB-01-25_4Prunus aviumhaplotype
5Pav-HB-01-25_5Prunus aviumhaplotype
6Pav-HB-01-25_6Prunus aviumhaplotype
7Pav-HB-01-25_7Prunus aviumhaplotype
8Pav-HB-01-25_8Prunus aviumhaplotype
9Pav-HB-01-25_9Prunus aviumhaplotype
10Pav-HB-01-25_10Prunus aviumhaplotype
11Pav-HB-01-25_11Prunus aviumhaplotype
12Pav-HB-01-25_12Prunus aviumhaplotype
13Pav-HB-01-25_13Prunus aviumhaplotype
14Pav-HB-01-25_14Prunus aviumhaplotype
15Pav-HB-01-25_15Prunus aviumhaplotype
16Pav-HB-01-25_16Prunus aviumhaplotype
17Pav-HB-01-25_17Prunus aviumhaplotype
18Pav-HB-01-25_18Prunus aviumhaplotype
19Pav-HB-01-25_19Prunus aviumhaplotype
20Pav-HB-01-25_20Prunus aviumhaplotype
21Pav-HB-01-25_21Prunus aviumhaplotype
22Pav-HB-01-25_22Prunus aviumhaplotype
23Pav-HB-01-25_23Prunus aviumhaplotype
24Pav-HB-01-25_24Prunus aviumhaplotype
25Pav-HB-01-25_25Prunus aviumhaplotype
26Pav-HB-01-25_26Prunus aviumhaplotype
27Pav-HB-01-25_27Prunus aviumhaplotype
28Pav-HB-01-25_28Prunus aviumhaplotype
29Pav-HB-01-25_29Prunus aviumhaplotype
30Pav-HB-01-25_30Prunus aviumhaplotype
31Pav-HB-01-25_31Prunus aviumhaplotype
32Pav-HB-01-25_32Prunus aviumhaplotype
33Pav-HB-01-25_33Prunus aviumhaplotype
34Pav-HB-01-25_34Prunus aviumhaplotype
35Pav-HB-01-25_35Prunus aviumhaplotype
36Pav-HB-01-25_36Prunus aviumhaplotype
37Pav-HB-01-25_37Prunus aviumhaplotype
38Pav-HB-01-25_38Prunus aviumhaplotype
39Pav-HB-01-25_39Prunus aviumhaplotype
40Pav-HB-01-25_40Prunus aviumhaplotype
41Pav-HB-01-25_41Prunus aviumhaplotype
42Pav-HB-01-25_42Prunus aviumhaplotype
43Pav-HB-01-25_43Prunus aviumhaplotype
44Pav-HB-01-25_44Prunus aviumhaplotype
45Pav-HB-01-25_45Prunus aviumhaplotype
46Pav-HB-01-25_46Prunus aviumhaplotype
47Pav-HB-01-25_47Prunus aviumhaplotype
48Pav-HB-01-25_48Prunus aviumhaplotype
49Pav-HB-01-25_49Prunus aviumhaplotype
50Pav-HB-01-25_50Prunus aviumhaplotype
51Pav-HB-01-25_51Prunus aviumhaplotype
52Pav-HB-01-25_52Prunus aviumhaplotype
53Pav-HB-01-25_53Prunus aviumhaplotype
54Pav-HB-01-25_54Prunus aviumhaplotype
55Pav-HB-01-25_55Prunus aviumhaplotype
56Pav-HB-01-25_56Prunus aviumhaplotype
57Pav-HB-01-25_57Prunus aviumhaplotype
58Pav-HB-01-25_58Prunus aviumhaplotype
59Pav-HB-01-25_59Prunus aviumhaplotype
60Pav-HB-01-25_60Prunus aviumhaplotype
61Pav-HB-01-25_61Prunus aviumhaplotype
62Pav-HB-01-25_62Prunus aviumhaplotype
63Pav-HB-01-25_63Prunus aviumhaplotype
64Pav-HB-01-25_64Prunus aviumhaplotype
65Pav-HB-01-25_65Prunus aviumhaplotype
66Pav-HB-01-25_66Prunus aviumhaplotype
67Pav-HB-01-25_67Prunus aviumhaplotype
68Pav-HB-01-25_68Prunus aviumhaplotype
69Pav-HB-01-25_69Prunus aviumhaplotype
70Pav-HB-01-25_70Prunus aviumhaplotype
71Pav-HB-01-25_71Prunus aviumhaplotype
72Pav-HB-01-25_72Prunus aviumhaplotype
73Pav-HB-01-25_73Prunus aviumhaplotype
74Pav-HB-01-25_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015R1N/A66.32Rsweet_1_31301016View
2Sweet Cherry-RL-F1-2015R1N/A89.63Rsweet_1_31301016View
3Prunus-TE-6K cherry SNP-estimate1N/A42.94RosBREED_snp_sweet_cherry_Pp1_31301016View
4sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A104.21RosBREED_snp_sweet_cherry_Pp1_31301016View
5Sweet Cherry-BCxBC-F2LG1N/A77.48RosBREED_snp_sweet_cherry_Pp1_31301016View
6Sweet Cherry-RL-F1-2014R1N/A98.3RosBREED_snp_sweet_cherry_Pp1_31301016View
7Sweet Cherry-RG-F1-2014R1N/A73.8RosBREED_snp_sweet_cherry_Pp1_31301016View
8Sweet Cherry-RosBREED-3.8K-20201N/A91.33RosBREED_snp_sweet_cherry_Pp1_31301016View
9Sweet Cherry-RosBREED-1.6K-20191N/A90.55RosBREED_snp_sweet_cherry_Pp1_31301016View
10Sweet Cherry-BTK-Kordia-2013LG01N/A123.8ss490547271View
11Sweet Cherry-RL-Regina-2013LG01N/A89.9ss490547271View
12Sweet Cherry-BTK-F1-2013LG01N/A92ss490547271View
13Sweet Cherry-RL-F1-2013LG01N/A90.6ss490547271View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:31301016..31301016. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:32274855..32274855. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:26742182..26742182. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)