RosBREED_snp_sweet_cherry_Pp1_27968875, RosBREED_snp_sweet_cherry_Pp1_27968875 (genetic_marker) Prunus avium

Marker Overview
NameRosBREED_snp_sweet_cherry_Pp1_27968875
AliasRosBREED_snp_sweet_1_27968875
ss490547123
rs271786671
Rsweet_1_27968875
dbSNP IDss490547123
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_sweet_cherry_Pp1_27968875
TypeSNP
SNP AllelesA/C
SpeciesPrunus avium
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rsweet_1_27968875Rsweet_1_27968875Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp1_27968875RosBREED_snp_sweet_cherry_Pp1_27968875Prunus aviummarker_locus
ss490547123ss490547123Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp1_27968875RosBREED_snp_sweet_cherry_Pp1_27968875-67.672Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-01-23Pav-HB-01-23Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-01-23_2Prunus aviumhaplotype
3Pav-HB-01-23_3Prunus aviumhaplotype
4Pav-HB-01-23_4Prunus aviumhaplotype
5Pav-HB-01-23_5Prunus aviumhaplotype
6Pav-HB-01-23_6Prunus aviumhaplotype
7Pav-HB-01-23_7Prunus aviumhaplotype
8Pav-HB-01-23_8Prunus aviumhaplotype
9Pav-HB-01-23_9Prunus aviumhaplotype
10Pav-HB-01-23_10Prunus aviumhaplotype
11Pav-HB-01-23_11Prunus aviumhaplotype
12Pav-HB-01-23_12Prunus aviumhaplotype
13Pav-HB-01-23_13Prunus aviumhaplotype
14Pav-HB-01-23_14Prunus aviumhaplotype
15Pav-HB-01-23_15Prunus aviumhaplotype
16Pav-HB-01-23_16Prunus aviumhaplotype
17Pav-HB-01-23_17Prunus aviumhaplotype
18Pav-HB-01-23_18Prunus aviumhaplotype
19Pav-HB-01-23_19Prunus aviumhaplotype
20Pav-HB-01-23_20Prunus aviumhaplotype
21Pav-HB-01-23_21Prunus aviumhaplotype
22Pav-HB-01-23_22Prunus aviumhaplotype
23Pav-HB-01-23_23Prunus aviumhaplotype
24Pav-HB-01-23_24Prunus aviumhaplotype
25Pav-HB-01-23_25Prunus aviumhaplotype
26Pav-HB-01-23_26Prunus aviumhaplotype
27Pav-HB-01-23_27Prunus aviumhaplotype
28Pav-HB-01-23_28Prunus aviumhaplotype
29Pav-HB-01-23_29Prunus aviumhaplotype
30Pav-HB-01-23_30Prunus aviumhaplotype
31Pav-HB-01-23_31Prunus aviumhaplotype
32Pav-HB-01-23_32Prunus aviumhaplotype
33Pav-HB-01-23_33Prunus aviumhaplotype
34Pav-HB-01-23_34Prunus aviumhaplotype
35Pav-HB-01-23_35Prunus aviumhaplotype
36Pav-HB-01-23_36Prunus aviumhaplotype
37Pav-HB-01-23_37Prunus aviumhaplotype
38Pav-HB-01-23_38Prunus aviumhaplotype
39Pav-HB-01-23_39Prunus aviumhaplotype
40Pav-HB-01-23_40Prunus aviumhaplotype
41Pav-HB-01-23_41Prunus aviumhaplotype
42Pav-HB-01-23_42Prunus aviumhaplotype
43Pav-HB-01-23_43Prunus aviumhaplotype
44Pav-HB-01-23_44Prunus aviumhaplotype
45Pav-HB-01-23_45Prunus aviumhaplotype
46Pav-HB-01-23_46Prunus aviumhaplotype
47Pav-HB-01-23_47Prunus aviumhaplotype
48Pav-HB-01-23_48Prunus aviumhaplotype
49Pav-HB-01-23_49Prunus aviumhaplotype
50Pav-HB-01-23_50Prunus aviumhaplotype
51Pav-HB-01-23_51Prunus aviumhaplotype
52Pav-HB-01-23_52Prunus aviumhaplotype
53Pav-HB-01-23_53Prunus aviumhaplotype
54Pav-HB-01-23_54Prunus aviumhaplotype
55Pav-HB-01-23_55Prunus aviumhaplotype
56Pav-HB-01-23_56Prunus aviumhaplotype
57Pav-HB-01-23_57Prunus aviumhaplotype
58Pav-HB-01-23_58Prunus aviumhaplotype
59Pav-HB-01-23_59Prunus aviumhaplotype
60Pav-HB-01-23_60Prunus aviumhaplotype
61Pav-HB-01-23_61Prunus aviumhaplotype
62Pav-HB-01-23_62Prunus aviumhaplotype
63Pav-HB-01-23_63Prunus aviumhaplotype
64Pav-HB-01-23_64Prunus aviumhaplotype
65Pav-HB-01-23_65Prunus aviumhaplotype
66Pav-HB-01-23_66Prunus aviumhaplotype
67Pav-HB-01-23_67Prunus aviumhaplotype
68Pav-HB-01-23_68Prunus aviumhaplotype
69Pav-HB-01-23_69Prunus aviumhaplotype
70Pav-HB-01-23_70Prunus aviumhaplotype
71Pav-HB-01-23_71Prunus aviumhaplotype
72Pav-HB-01-23_72Prunus aviumhaplotype
73Pav-HB-01-23_73Prunus aviumhaplotype
74Pav-HB-01-23_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015G1N/A72.75Rsweet_1_27968875View
2Prunus-TE-6K cherry SNP-estimate1N/A37.81RosBREED_snp_sweet_cherry_Pp1_27968875View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A97.96RosBREED_snp_sweet_cherry_Pp1_27968875View
4Sweet Cherry-V-F1LG1N/A79.73RosBREED_snp_sweet_cherry_Pp1_27968875View
5Sweet Cherry-VxC-F1LG1N/A77.97RosBREED_snp_sweet_cherry_Pp1_27968875View
6Sweet Cherry-BCxBC-F2LG1N/A70.36RosBREED_snp_sweet_cherry_Pp1_27968875View
7Sweet Cherry-RG-F1-2014G1N/A83.6RosBREED_snp_sweet_cherry_Pp1_27968875View
8Sweet Cherry-V-F1-6+9K_array1N/A71.3RosBREED_snp_sweet_cherry_Pp1_27968875View
9Sweet Cherry-RosBREED-3.8K-20201N/A79.86RosBREED_snp_sweet_cherry_Pp1_27968875View
10Sweet Cherry-RosBREED-1.6K-20191N/A79.08RosBREED_snp_sweet_cherry_Pp1_27968875View
11Sweet Cherry-AxS-F11N/A105.97RosBREED_snp_sweet_cherry_Pp1_27968875View
12Sweet Cherry-VxC-F1-6+9K_array1N/A101.91RosBREED_snp_sweet_cherry_Pp1_27968875View
13Sweet Cherry-BTK-Kordia-2013LG01N/A113.1ss490547123View
14Sweet Cherry-BTK-F1-2013LG01N/A83.1ss490547123View
15SweetCherry-FX-F1-XX1N/A67.67RosBREED_snp_sweet_cherry_Pp1_27968875View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:27968875..27968875. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:28943477..28943477. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:22945322..22945322. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)