RosCOS1295-534_snp_sweet_cherry_Pp3_05359437, RosCOS1295-534_snp_sweet_cherry_Pp3_05359437 (genetic_marker) Prunus avium

Marker Overview
NameRosCOS1295-534_snp_sweet_cherry_Pp3_05359437
AliasRosCOS1295-534_snp_sweet_3_05359437
ss490559004
rs271790261
R1295-534_3_05359437
dbSNP IDss490559004
SNP Array ID
IRSC 6K SNP array for cherry:RosCOS1295-534_snp_sweet_cherry_Pp3_05359437
TypeSNP
SNP AllelesA/G
SpeciesPrunus avium
PolymorphismP_ RosCOS1295-534_snp_sweet_cherry_Pp3_05359437
Publication[view all]
Associated WithROSC_FMLY_CSA1_1295
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

This genetic_marker is associated with the following contig feature(s):

Feature NameUnique NameSpeciesType
ROSC_FMLY_CSA1_1295ROSC_FMLY_CSA1_1295Rosaceae Family Genera sp.contig


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
R1295-534_3_05359437R1295-534_3_05359437Prunus aviummarker_locus
RosCOS1295-534_snp_sweet_cherry_Pp3_05359437RosCOS1295-534_snp_sweet_cherry_Pp3_05359437Prunus aviummarker_locus
ss490559004ss490559004Prunus aviummarker_locus
RosCOS1295-534_snp_sweet_cherry_Pp3_05359437RosCOS1295-534_snp_sweet_cherry_Pp3_05359437-29.12Prunus aviummarker_locus
RosCOS1295-534_snp_sweet_cherry_Pp3_05359437RosCOS1295-534_snp_sweet_cherry_Pp3_05359437-24.493Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-03-10Pav-HB-03-10Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-03-10_2Prunus aviumhaplotype
3Pav-HB-03-10_3Prunus aviumhaplotype
4Pav-HB-03-10_4Prunus aviumhaplotype
5Pav-HB-03-10_5Prunus aviumhaplotype
6Pav-HB-03-10_6Prunus aviumhaplotype
7Pav-HB-03-10_7Prunus aviumhaplotype
8Pav-HB-03-10_8Prunus aviumhaplotype
9Pav-HB-03-10_9Prunus aviumhaplotype
10Pav-HB-03-10_10Prunus aviumhaplotype
11Pav-HB-03-10_11Prunus aviumhaplotype
12Pav-HB-03-10_12Prunus aviumhaplotype
13Pav-HB-03-10_13Prunus aviumhaplotype
14Pav-HB-03-10_14Prunus aviumhaplotype
15Pav-HB-03-10_15Prunus aviumhaplotype
16Pav-HB-03-10_16Prunus aviumhaplotype
17Pav-HB-03-10_17Prunus aviumhaplotype
18Pav-HB-03-10_18Prunus aviumhaplotype
19Pav-HB-03-10_19Prunus aviumhaplotype
20Pav-HB-03-10_20Prunus aviumhaplotype
21Pav-HB-03-10_21Prunus aviumhaplotype
22Pav-HB-03-10_22Prunus aviumhaplotype
23Pav-HB-03-10_23Prunus aviumhaplotype
24Pav-HB-03-10_24Prunus aviumhaplotype
25Pav-HB-03-10_25Prunus aviumhaplotype
26Pav-HB-03-10_26Prunus aviumhaplotype
27Pav-HB-03-10_27Prunus aviumhaplotype
28Pav-HB-03-10_28Prunus aviumhaplotype
29Pav-HB-03-10_29Prunus aviumhaplotype
30Pav-HB-03-10_30Prunus aviumhaplotype
31Pav-HB-03-10_31Prunus aviumhaplotype
32Pav-HB-03-10_32Prunus aviumhaplotype
33Pav-HB-03-10_33Prunus aviumhaplotype
34Pav-HB-03-10_34Prunus aviumhaplotype
35Pav-HB-03-10_35Prunus aviumhaplotype
36Pav-HB-03-10_36Prunus aviumhaplotype
37Pav-HB-03-10_37Prunus aviumhaplotype
38Pav-HB-03-10_38Prunus aviumhaplotype
39Pav-HB-03-10_39Prunus aviumhaplotype
40Pav-HB-03-10_40Prunus aviumhaplotype
41Pav-HB-03-10_41Prunus aviumhaplotype
42Pav-HB-03-10_42Prunus aviumhaplotype
43Pav-HB-03-10_43Prunus aviumhaplotype
44Pav-HB-03-10_44Prunus aviumhaplotype
45Pav-HB-03-10_45Prunus aviumhaplotype
46Pav-HB-03-10_46Prunus aviumhaplotype
47Pav-HB-03-10_47Prunus aviumhaplotype
48Pav-HB-03-10_48Prunus aviumhaplotype
49Pav-HB-03-10_49Prunus aviumhaplotype
50Pav-HB-03-10_50Prunus aviumhaplotype
51Pav-HB-03-10_51Prunus aviumhaplotype
52Pav-HB-03-10_52Prunus aviumhaplotype
53Pav-HB-03-10_53Prunus aviumhaplotype
54Pav-HB-03-10_54Prunus aviumhaplotype
55Pav-HB-03-10_55Prunus aviumhaplotype
56Pav-HB-03-10_56Prunus aviumhaplotype
57Pav-HB-03-10_57Prunus aviumhaplotype
58Pav-HB-03-10_58Prunus aviumhaplotype
59Pav-HB-03-10_59Prunus aviumhaplotype
60Pav-HB-03-10_60Prunus aviumhaplotype
61Pav-HB-03-10_61Prunus aviumhaplotype
62Pav-HB-03-10_62Prunus aviumhaplotype
63Pav-HB-03-10_63Prunus aviumhaplotype
64Pav-HB-03-10_64Prunus aviumhaplotype
65Pav-HB-03-10_65Prunus aviumhaplotype
66Pav-HB-03-10_66Prunus aviumhaplotype
67Pav-HB-03-10_67Prunus aviumhaplotype
68Pav-HB-03-10_68Prunus aviumhaplotype
69Pav-HB-03-10_69Prunus aviumhaplotype
70Pav-HB-03-10_70Prunus aviumhaplotype
71Pav-HB-03-10_71Prunus aviumhaplotype
72Pav-HB-03-10_72Prunus aviumhaplotype
73Pav-HB-03-10_73Prunus aviumhaplotype
74Pav-HB-03-10_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015G3N/A33.16R1295-534_3_05359437View
2Prunus-TE-6K cherry SNP-estimate3N/A16.94RosCOS1295-534_snp_sweet_cherry_Pp3_05359437View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate3N/A30.14RosCOS1295-534_snp_sweet_cherry_Pp3_05359437View
4Sweet Cherry-RG-F1-2014G3N/A33.7RosCOS1295-534_snp_sweet_cherry_Pp3_05359437View
5Sweet Cherry-RosBREED-1.6K-20193N/A29.12RosCOS1295-534_snp_sweet_cherry_Pp3_05359437View
6Sweet Cherry-RosBREED-3.8K-20203N/A31.11RosCOS1295-534_snp_sweet_cherry_Pp3_05359437View
7Sweet Cherry-A-F13N/A45.19RosCOS1295-534_snp_sweet_cherry_Pp3_05359437View
8Sweet Cherry-AxS-F13N/A45.19RosCOS1295-534_snp_sweet_cherry_Pp3_05359437View
9Sweet Cherry-BTK-Kordia-2013LG03N/A29.2ss490559004View
10Sweet Cherry-RL-Lapins-2013LG03N/A25.5ss490559004View
11Sweet Cherry-BTK-F1-2013LG03N/A28.9ss490559004View
12Sweet Cherry-RL-F1-2013LG03N/A29.3ss490559004View
13Sour Cherry-M172x25-F1LG3N/A29.12RosCOS1295-534_snp_sweet_cherry_Pp3_05359437View
14SourCherry-Montx25-F1LG3N/A29.12RosCOS1295-534_snp_sweet_cherry_Pp3_05359437View
15SweetCherry-FX-F1-XX3N/A24.49RosCOS1295-534_snp_sweet_cherry_Pp3_05359437View
Alignments
Feature NameTypeLocationAnalysis
scaffold_3 supercontig scaffold_3:5359437..5359437. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp03 chromosome Pp03:6219357..6219357. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr3 chromosome PAV_r1.0chr3:5932186..5932186. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)