RosCOS1500-271_snp_sweet_cherry_Pp5_09393638, RosCOS1500-271_snp_sweet_cherry_Pp5_09393638 (genetic_marker) Prunus avium

Marker Overview
NameRosCOS1500-271_snp_sweet_cherry_Pp5_09393638
AliasRosCOS1500-271_snp_sweet_5_09393638
ss490559113
rs271790298
R1500-271_5_09393638
dbSNP IDss490559113
SNP Array ID
IRSC 6K SNP array for cherry:RosCOS1500-271_snp_sweet_cherry_Pp5_09393638
TypeSNP
SNP AllelesT/C
SpeciesPrunus avium
Publication[view all]
Associated WithROSC_FMLY_CSA1_1500
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

This genetic_marker is associated with the following contig feature(s):

Feature NameUnique NameSpeciesType
ROSC_FMLY_CSA1_1500ROSC_FMLY_CSA1_1500Rosaceae Family Genera sp.contig


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
R1500-271_5_09393638R1500-271_5_09393638Prunus aviummarker_locus
RosCOS1500-271_snp_sweet_cherry_Pp5_09393638RosCOS1500-271_snp_sweet_cherry_Pp5_09393638Prunus aviummarker_locus
ss490559113ss490559113Prunus aviummarker_locus
RosCOS1500-271_snp_sweet_cherry_Pp5_09393638RosCOS1500-271_snp_sweet_cherry_Pp5_09393638-18.53Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
GR:5:8-13GR:5:8-13Prunus cerasushaplotype_block
Pav-HB-05-6Pav-HB-05-6Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
aGR:5:8-13_aPrunus aviumhaplotype
bGR:5:8-13_bPrunus aviumhaplotype
cGR:5:8-13_cPrunus aviumhaplotype
dGR:5:8-13_dPrunus aviumhaplotype
eGR:5:8-13_ePrunus aviumhaplotype
fGR:5:8-13_fPrunus aviumhaplotype
gGR:5:8-13_gPrunus aviumhaplotype
hGR:5:8-13_hPrunus aviumhaplotype
iGR:5:8-13_iPrunus aviumhaplotype
jGR:5:8-13_jPrunus aviumhaplotype
kGR:5:8-13_kPrunus aviumhaplotype
lGR:5:8-13_lPrunus aviumhaplotype
mGR:5:8-13_mPrunus aviumhaplotype
nGR:5:8-13_nPrunus aviumhaplotype
oGR:5:8-13_oPrunus aviumhaplotype
pGR:5:8-13_pPrunus aviumhaplotype
qGR:5:8-13_qPrunus aviumhaplotype
rGR:5:8-13_rPrunus aviumhaplotype
sGR:5:8-13_sPrunus aviumhaplotype
x1GR:5:8-13_x1Prunus aviumhaplotype
x2GR:5:8-13_x2Prunus aviumhaplotype
x3GR:5:8-13_x3Prunus aviumhaplotype
x4GR:5:8-13_x4Prunus aviumhaplotype
x5GR:5:8-13_x5Prunus aviumhaplotype
x6GR:5:8-13_x6Prunus aviumhaplotype
x7GR:5:8-13_x7Prunus aviumhaplotype
x8GR:5:8-13_x8Prunus aviumhaplotype
d1GR:5:8-13_d1Prunus aviumhaplotype
d2GR:5:8-13_d2Prunus aviumhaplotype
d3GR:5:8-13_d3Prunus aviumhaplotype
d4GR:5:8-13_d4Prunus aviumhaplotype
1'GR:5:8-13_1'Prunus aviumhaplotype
4GR:5:8-13_4Prunus aviumhaplotype
6GR:5:8-13_6Prunus aviumhaplotype
13'GR:5:8-13_13'Prunus aviumhaplotype
13mGR:5:8-13_13mPrunus aviumhaplotype
14GR:5:8-13_14Prunus aviumhaplotype
16GR:5:8-13_16Prunus aviumhaplotype
34GR:5:8-13_34Prunus aviumhaplotype
35GR:5:8-13_35Prunus aviumhaplotype
36aGR:5:8-13_36aPrunus aviumhaplotype
36bGR:5:8-13_36bPrunus aviumhaplotype
36b2GR:5:8-13_36b2Prunus aviumhaplotype
2Pav-HB-05-6_2Prunus aviumhaplotype
3Pav-HB-05-6_3Prunus aviumhaplotype
4Pav-HB-05-6_4Prunus aviumhaplotype
5Pav-HB-05-6_5Prunus aviumhaplotype
6Pav-HB-05-6_6Prunus aviumhaplotype
7Pav-HB-05-6_7Prunus aviumhaplotype
8Pav-HB-05-6_8Prunus aviumhaplotype
9Pav-HB-05-6_9Prunus aviumhaplotype
10Pav-HB-05-6_10Prunus aviumhaplotype
11Pav-HB-05-6_11Prunus aviumhaplotype
12Pav-HB-05-6_12Prunus aviumhaplotype
13Pav-HB-05-6_13Prunus aviumhaplotype
14Pav-HB-05-6_14Prunus aviumhaplotype
15Pav-HB-05-6_15Prunus aviumhaplotype
16Pav-HB-05-6_16Prunus aviumhaplotype
17Pav-HB-05-6_17Prunus aviumhaplotype
18Pav-HB-05-6_18Prunus aviumhaplotype
19Pav-HB-05-6_19Prunus aviumhaplotype
20Pav-HB-05-6_20Prunus aviumhaplotype
21Pav-HB-05-6_21Prunus aviumhaplotype
22Pav-HB-05-6_22Prunus aviumhaplotype
23Pav-HB-05-6_23Prunus aviumhaplotype
24Pav-HB-05-6_24Prunus aviumhaplotype
25Pav-HB-05-6_25Prunus aviumhaplotype
26Pav-HB-05-6_26Prunus aviumhaplotype
27Pav-HB-05-6_27Prunus aviumhaplotype
28Pav-HB-05-6_28Prunus aviumhaplotype
29Pav-HB-05-6_29Prunus aviumhaplotype
30Pav-HB-05-6_30Prunus aviumhaplotype
31Pav-HB-05-6_31Prunus aviumhaplotype
32Pav-HB-05-6_32Prunus aviumhaplotype
33Pav-HB-05-6_33Prunus aviumhaplotype
34Pav-HB-05-6_34Prunus aviumhaplotype
35Pav-HB-05-6_35Prunus aviumhaplotype
36Pav-HB-05-6_36Prunus aviumhaplotype
37Pav-HB-05-6_37Prunus aviumhaplotype
38Pav-HB-05-6_38Prunus aviumhaplotype
39Pav-HB-05-6_39Prunus aviumhaplotype
40Pav-HB-05-6_40Prunus aviumhaplotype
41Pav-HB-05-6_41Prunus aviumhaplotype
42Pav-HB-05-6_42Prunus aviumhaplotype
43Pav-HB-05-6_43Prunus aviumhaplotype
44Pav-HB-05-6_44Prunus aviumhaplotype
45Pav-HB-05-6_45Prunus aviumhaplotype
46Pav-HB-05-6_46Prunus aviumhaplotype
47Pav-HB-05-6_47Prunus aviumhaplotype
48Pav-HB-05-6_48Prunus aviumhaplotype
49Pav-HB-05-6_49Prunus aviumhaplotype
50Pav-HB-05-6_50Prunus aviumhaplotype
51Pav-HB-05-6_51Prunus aviumhaplotype
52Pav-HB-05-6_52Prunus aviumhaplotype
53Pav-HB-05-6_53Prunus aviumhaplotype
54Pav-HB-05-6_54Prunus aviumhaplotype
55Pav-HB-05-6_55Prunus aviumhaplotype
56Pav-HB-05-6_56Prunus aviumhaplotype
57Pav-HB-05-6_57Prunus aviumhaplotype
58Pav-HB-05-6_58Prunus aviumhaplotype
59Pav-HB-05-6_59Prunus aviumhaplotype
60Pav-HB-05-6_60Prunus aviumhaplotype
61Pav-HB-05-6_61Prunus aviumhaplotype
62Pav-HB-05-6_62Prunus aviumhaplotype
63Pav-HB-05-6_63Prunus aviumhaplotype
64Pav-HB-05-6_64Prunus aviumhaplotype
65Pav-HB-05-6_65Prunus aviumhaplotype
66Pav-HB-05-6_66Prunus aviumhaplotype
67Pav-HB-05-6_67Prunus aviumhaplotype
68Pav-HB-05-6_68Prunus aviumhaplotype
69Pav-HB-05-6_69Prunus aviumhaplotype
70Pav-HB-05-6_70Prunus aviumhaplotype
71Pav-HB-05-6_71Prunus aviumhaplotype
72Pav-HB-05-6_72Prunus aviumhaplotype
73Pav-HB-05-6_73Prunus aviumhaplotype
74Pav-HB-05-6_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RL-F1-2015L5N/A18.52R1500-271_5_09393638View
2Prunus-TE-6K cherry SNP-estimate5N/A16.98RosCOS1500-271_snp_sweet_cherry_Pp5_09393638View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate5N/A29.26RosCOS1500-271_snp_sweet_cherry_Pp5_09393638View
4Sweet Cherry-V-F1LG5N/A30RosCOS1500-271_snp_sweet_cherry_Pp5_09393638View
5Sweet Cherry-VxC-F1LG5N/A28.25RosCOS1500-271_snp_sweet_cherry_Pp5_09393638View
6Sweet Cherry-RL-F1-2014L5N/A20.1RosCOS1500-271_snp_sweet_cherry_Pp5_09393638View
7Sweet Cherry-RosBREED-1.6K-20195N/A18.53RosCOS1500-271_snp_sweet_cherry_Pp5_09393638View
8Sweet Cherry-RosBREED-3.8K-20205N/A18.53RosCOS1500-271_snp_sweet_cherry_Pp5_09393638View
9Sweet Cherry-V-F1-6+9K_array5N/A25.28RosCOS1500-271_snp_sweet_cherry_Pp5_09393638View
10Sweet Cherry-VxC-F1-6+9K_array5N/A28.18RosCOS1500-271_snp_sweet_cherry_Pp5_09393638View
11Sweet Cherry-RL-Lapins-2013LG05N/A18.4ss490559113View
12Sweet Cherry-BTK-F1-2013LG05N/A21.5ss490559113View
13Sweet Cherry-RL-F1-2013LG05N/A18.5ss490559113View
14Sour Cherry-M172x25-F1LG5N/A18.53RosCOS1500-271_snp_sweet_cherry_Pp5_09393638View
15SourCherry-RE-F1LG5N/A18.53RosCOS1500-271_snp_sweet_cherry_Pp5_09393638View
Alignments
Feature NameTypeLocationAnalysis
scaffold_5 supercontig scaffold_5:9393638..9393638. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp05 chromosome Pp05:9394649..9394649. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr5 chromosome PAV_r1.0chr5:7060289..7060289. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)