RosBREED_snp_sweet_cherry_Pp5_04755463, RosBREED_snp_sweet_cherry_Pp5_04755463 (genetic_marker) Prunus avium

Marker Overview
NameRosBREED_snp_sweet_cherry_Pp5_04755463
AliasRosBREED_snp_sweet_5_04755463
ss490553922
rs271788577
Rsweet_5_04755463
dbSNP IDss490553922
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_sweet_cherry_Pp5_04755463
TypeSNP
SNP AllelesT/C
SpeciesPrunus avium
PolymorphismP_ RosBREED_snp_sweet_cherry_Pp5_04755463
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rsweet_5_04755463Rsweet_5_04755463Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp5_04755463RosBREED_snp_sweet_cherry_Pp5_04755463Prunus aviummarker_locus
ss490553922ss490553922Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp5_04755463RosBREED_snp_sweet_cherry_Pp5_04755463-5.64Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp5_04755463RosBREED_snp_sweet_cherry_Pp5_04755463-8.156Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
GR:5:0-6GR:5:0-6Prunus cerasushaplotype_block
Pav-HB-05-3Pav-HB-05-3Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
aGR:5:0-6_aPrunus aviumhaplotype
bGR:5:0-6_bPrunus aviumhaplotype
cGR:5:0-6_cPrunus aviumhaplotype
dGR:5:0-6_dPrunus aviumhaplotype
eGR:5:0-6_ePrunus aviumhaplotype
fGR:5:0-6_fPrunus aviumhaplotype
gGR:5:0-6_gPrunus aviumhaplotype
hGR:5:0-6_hPrunus aviumhaplotype
iGR:5:0-6_iPrunus aviumhaplotype
jGR:5:0-6_jPrunus aviumhaplotype
kGR:5:0-6_kPrunus aviumhaplotype
lGR:5:0-6_lPrunus aviumhaplotype
mGR:5:0-6_mPrunus aviumhaplotype
nGR:5:0-6_nPrunus aviumhaplotype
oGR:5:0-6_oPrunus aviumhaplotype
pGR:5:0-6_pPrunus aviumhaplotype
qGR:5:0-6_qPrunus aviumhaplotype
rGR:5:0-6_rPrunus aviumhaplotype
sGR:5:0-6_sPrunus aviumhaplotype
x1GR:5:0-6_x1Prunus aviumhaplotype
x2GR:5:0-6_x2Prunus aviumhaplotype
x3GR:5:0-6_x3Prunus aviumhaplotype
x4GR:5:0-6_x4Prunus aviumhaplotype
x5GR:5:0-6_x5Prunus aviumhaplotype
x6GR:5:0-6_x6Prunus aviumhaplotype
x7GR:5:0-6_x7Prunus aviumhaplotype
x8GR:5:0-6_x8Prunus aviumhaplotype
d1GR:5:0-6_d1Prunus aviumhaplotype
d2GR:5:0-6_d2Prunus aviumhaplotype
d3GR:5:0-6_d3Prunus aviumhaplotype
d4GR:5:0-6_d4Prunus aviumhaplotype
1'GR:5:0-6_1'Prunus aviumhaplotype
4GR:5:0-6_4Prunus aviumhaplotype
6GR:5:0-6_6Prunus aviumhaplotype
13'GR:5:0-6_13'Prunus aviumhaplotype
13mGR:5:0-6_13mPrunus aviumhaplotype
14GR:5:0-6_14Prunus aviumhaplotype
16GR:5:0-6_16Prunus aviumhaplotype
34GR:5:0-6_34Prunus aviumhaplotype
35GR:5:0-6_35Prunus aviumhaplotype
36aGR:5:0-6_36aPrunus aviumhaplotype
36bGR:5:0-6_36bPrunus aviumhaplotype
36b2GR:5:0-6_36b2Prunus aviumhaplotype
2Pav-HB-05-3_2Prunus aviumhaplotype
3Pav-HB-05-3_3Prunus aviumhaplotype
4Pav-HB-05-3_4Prunus aviumhaplotype
5Pav-HB-05-3_5Prunus aviumhaplotype
6Pav-HB-05-3_6Prunus aviumhaplotype
7Pav-HB-05-3_7Prunus aviumhaplotype
8Pav-HB-05-3_8Prunus aviumhaplotype
9Pav-HB-05-3_9Prunus aviumhaplotype
10Pav-HB-05-3_10Prunus aviumhaplotype
11Pav-HB-05-3_11Prunus aviumhaplotype
12Pav-HB-05-3_12Prunus aviumhaplotype
13Pav-HB-05-3_13Prunus aviumhaplotype
14Pav-HB-05-3_14Prunus aviumhaplotype
15Pav-HB-05-3_15Prunus aviumhaplotype
16Pav-HB-05-3_16Prunus aviumhaplotype
17Pav-HB-05-3_17Prunus aviumhaplotype
18Pav-HB-05-3_18Prunus aviumhaplotype
19Pav-HB-05-3_19Prunus aviumhaplotype
20Pav-HB-05-3_20Prunus aviumhaplotype
21Pav-HB-05-3_21Prunus aviumhaplotype
22Pav-HB-05-3_22Prunus aviumhaplotype
23Pav-HB-05-3_23Prunus aviumhaplotype
24Pav-HB-05-3_24Prunus aviumhaplotype
25Pav-HB-05-3_25Prunus aviumhaplotype
26Pav-HB-05-3_26Prunus aviumhaplotype
27Pav-HB-05-3_27Prunus aviumhaplotype
28Pav-HB-05-3_28Prunus aviumhaplotype
29Pav-HB-05-3_29Prunus aviumhaplotype
30Pav-HB-05-3_30Prunus aviumhaplotype
31Pav-HB-05-3_31Prunus aviumhaplotype
32Pav-HB-05-3_32Prunus aviumhaplotype
33Pav-HB-05-3_33Prunus aviumhaplotype
34Pav-HB-05-3_34Prunus aviumhaplotype
35Pav-HB-05-3_35Prunus aviumhaplotype
36Pav-HB-05-3_36Prunus aviumhaplotype
37Pav-HB-05-3_37Prunus aviumhaplotype
38Pav-HB-05-3_38Prunus aviumhaplotype
39Pav-HB-05-3_39Prunus aviumhaplotype
40Pav-HB-05-3_40Prunus aviumhaplotype
41Pav-HB-05-3_41Prunus aviumhaplotype
42Pav-HB-05-3_42Prunus aviumhaplotype
43Pav-HB-05-3_43Prunus aviumhaplotype
44Pav-HB-05-3_44Prunus aviumhaplotype
45Pav-HB-05-3_45Prunus aviumhaplotype
46Pav-HB-05-3_46Prunus aviumhaplotype
47Pav-HB-05-3_47Prunus aviumhaplotype
48Pav-HB-05-3_48Prunus aviumhaplotype
49Pav-HB-05-3_49Prunus aviumhaplotype
50Pav-HB-05-3_50Prunus aviumhaplotype
51Pav-HB-05-3_51Prunus aviumhaplotype
52Pav-HB-05-3_52Prunus aviumhaplotype
53Pav-HB-05-3_53Prunus aviumhaplotype
54Pav-HB-05-3_54Prunus aviumhaplotype
55Pav-HB-05-3_55Prunus aviumhaplotype
56Pav-HB-05-3_56Prunus aviumhaplotype
57Pav-HB-05-3_57Prunus aviumhaplotype
58Pav-HB-05-3_58Prunus aviumhaplotype
59Pav-HB-05-3_59Prunus aviumhaplotype
60Pav-HB-05-3_60Prunus aviumhaplotype
61Pav-HB-05-3_61Prunus aviumhaplotype
62Pav-HB-05-3_62Prunus aviumhaplotype
63Pav-HB-05-3_63Prunus aviumhaplotype
64Pav-HB-05-3_64Prunus aviumhaplotype
65Pav-HB-05-3_65Prunus aviumhaplotype
66Pav-HB-05-3_66Prunus aviumhaplotype
67Pav-HB-05-3_67Prunus aviumhaplotype
68Pav-HB-05-3_68Prunus aviumhaplotype
69Pav-HB-05-3_69Prunus aviumhaplotype
70Pav-HB-05-3_70Prunus aviumhaplotype
71Pav-HB-05-3_71Prunus aviumhaplotype
72Pav-HB-05-3_72Prunus aviumhaplotype
73Pav-HB-05-3_73Prunus aviumhaplotype
74Pav-HB-05-3_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015R5N/A12.67Rsweet_5_04755463View
2Sweet Cherry-RL-F1-2015R5N/A3.37Rsweet_5_04755463View
3Prunus-TE-6K cherry SNP-estimate5N/A6.76RosBREED_snp_sweet_cherry_Pp5_04755463View
4sweet cherry-consensus-map-2012-6K cherry SNP-estimate5N/A17.77RosBREED_snp_sweet_cherry_Pp5_04755463View
5Sweet Cherry-VxC-F1LG5N/A15.51RosBREED_snp_sweet_cherry_Pp5_04755463View
6Sweet Cherry-CxC-F2LG5N/A14.39RosBREED_snp_sweet_cherry_Pp5_04755463View
7Sweet Cherry-RL-F1-2014R5N/A3.3RosBREED_snp_sweet_cherry_Pp5_04755463View
8Sweet Cherry-RG-F1-2014R5N/A12.6RosBREED_snp_sweet_cherry_Pp5_04755463View
9Sweet Cherry-RosBREED-3.8K-20205N/A5.64RosBREED_snp_sweet_cherry_Pp5_04755463View
10Sweet Cherry-RosBREED-1.6K-20195N/A5.64RosBREED_snp_sweet_cherry_Pp5_04755463View
11Sweet Cherry-BTK-Black Tartarian-2013LG05N/A6ss490553922View
12Sweet Cherry-RL-Regina-2013LG05N/A3.4ss490553922View
13Sweet Cherry-BTK-F1-2013LG05N/A5.9ss490553922View
14Sweet Cherry-RL-F1-2013LG05N/A5.7ss490553922View
15Sour Cherry-M172x25-F1LG5N/A5.64RosBREED_snp_sweet_cherry_Pp5_04755463View
16SourCherry-Montx25-F1LG5N/A5.64RosBREED_snp_sweet_cherry_Pp5_04755463View
17SourCherry-25x25-F1LG5N/A5.64RosBREED_snp_sweet_cherry_Pp5_04755463View
18Sour Cherry-US-F1LG5N/A5.64RosBREED_snp_sweet_cherry_Pp5_04755463View
19SourCherry-RE-F1LG5N/A5.64RosBREED_snp_sweet_cherry_Pp5_04755463View
20SweetCherry-FX-F1-XX5N/A8.16RosBREED_snp_sweet_cherry_Pp5_04755463View
Alignments
Feature NameTypeLocationAnalysis
scaffold_5 supercontig scaffold_5:4755463..4755463. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp05 chromosome Pp05:4756124..4756124. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr5 chromosome PAV_r1.0chr5:4699606..4699606. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)