RosBREED_snp_sweet_cherry_Pp5_16642695, RosBREED_snp_sweet_cherry_Pp5_16642695 (genetic_marker) Prunus avium

Marker Overview
NameRosBREED_snp_sweet_cherry_Pp5_16642695
AliasRosBREED_snp_sweet_5_16642695
ss490554645
rs271788816
Rsweet_5_16642695
dbSNP IDss490554645
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_sweet_cherry_Pp5_16642695
TypeSNP
SNP AllelesT/C
SpeciesPrunus avium
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rsweet_5_16642695Rsweet_5_16642695Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp5_16642695RosBREED_snp_sweet_cherry_Pp5_16642695Prunus aviummarker_locus
ss490554645ss490554645Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-05-13Pav-HB-05-13Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-05-13_2Prunus aviumhaplotype
3Pav-HB-05-13_3Prunus aviumhaplotype
4Pav-HB-05-13_4Prunus aviumhaplotype
5Pav-HB-05-13_5Prunus aviumhaplotype
6Pav-HB-05-13_6Prunus aviumhaplotype
7Pav-HB-05-13_7Prunus aviumhaplotype
8Pav-HB-05-13_8Prunus aviumhaplotype
9Pav-HB-05-13_9Prunus aviumhaplotype
10Pav-HB-05-13_10Prunus aviumhaplotype
11Pav-HB-05-13_11Prunus aviumhaplotype
12Pav-HB-05-13_12Prunus aviumhaplotype
13Pav-HB-05-13_13Prunus aviumhaplotype
14Pav-HB-05-13_14Prunus aviumhaplotype
15Pav-HB-05-13_15Prunus aviumhaplotype
16Pav-HB-05-13_16Prunus aviumhaplotype
17Pav-HB-05-13_17Prunus aviumhaplotype
18Pav-HB-05-13_18Prunus aviumhaplotype
19Pav-HB-05-13_19Prunus aviumhaplotype
20Pav-HB-05-13_20Prunus aviumhaplotype
21Pav-HB-05-13_21Prunus aviumhaplotype
22Pav-HB-05-13_22Prunus aviumhaplotype
23Pav-HB-05-13_23Prunus aviumhaplotype
24Pav-HB-05-13_24Prunus aviumhaplotype
25Pav-HB-05-13_25Prunus aviumhaplotype
26Pav-HB-05-13_26Prunus aviumhaplotype
27Pav-HB-05-13_27Prunus aviumhaplotype
28Pav-HB-05-13_28Prunus aviumhaplotype
29Pav-HB-05-13_29Prunus aviumhaplotype
30Pav-HB-05-13_30Prunus aviumhaplotype
31Pav-HB-05-13_31Prunus aviumhaplotype
32Pav-HB-05-13_32Prunus aviumhaplotype
33Pav-HB-05-13_33Prunus aviumhaplotype
34Pav-HB-05-13_34Prunus aviumhaplotype
35Pav-HB-05-13_35Prunus aviumhaplotype
36Pav-HB-05-13_36Prunus aviumhaplotype
37Pav-HB-05-13_37Prunus aviumhaplotype
38Pav-HB-05-13_38Prunus aviumhaplotype
39Pav-HB-05-13_39Prunus aviumhaplotype
40Pav-HB-05-13_40Prunus aviumhaplotype
41Pav-HB-05-13_41Prunus aviumhaplotype
42Pav-HB-05-13_42Prunus aviumhaplotype
43Pav-HB-05-13_43Prunus aviumhaplotype
44Pav-HB-05-13_44Prunus aviumhaplotype
45Pav-HB-05-13_45Prunus aviumhaplotype
46Pav-HB-05-13_46Prunus aviumhaplotype
47Pav-HB-05-13_47Prunus aviumhaplotype
48Pav-HB-05-13_48Prunus aviumhaplotype
49Pav-HB-05-13_49Prunus aviumhaplotype
50Pav-HB-05-13_50Prunus aviumhaplotype
51Pav-HB-05-13_51Prunus aviumhaplotype
52Pav-HB-05-13_52Prunus aviumhaplotype
53Pav-HB-05-13_53Prunus aviumhaplotype
54Pav-HB-05-13_54Prunus aviumhaplotype
55Pav-HB-05-13_55Prunus aviumhaplotype
56Pav-HB-05-13_56Prunus aviumhaplotype
57Pav-HB-05-13_57Prunus aviumhaplotype
58Pav-HB-05-13_58Prunus aviumhaplotype
59Pav-HB-05-13_59Prunus aviumhaplotype
60Pav-HB-05-13_60Prunus aviumhaplotype
61Pav-HB-05-13_61Prunus aviumhaplotype
62Pav-HB-05-13_62Prunus aviumhaplotype
63Pav-HB-05-13_63Prunus aviumhaplotype
64Pav-HB-05-13_64Prunus aviumhaplotype
65Pav-HB-05-13_65Prunus aviumhaplotype
66Pav-HB-05-13_66Prunus aviumhaplotype
67Pav-HB-05-13_67Prunus aviumhaplotype
68Pav-HB-05-13_68Prunus aviumhaplotype
69Pav-HB-05-13_69Prunus aviumhaplotype
70Pav-HB-05-13_70Prunus aviumhaplotype
71Pav-HB-05-13_71Prunus aviumhaplotype
72Pav-HB-05-13_72Prunus aviumhaplotype
73Pav-HB-05-13_73Prunus aviumhaplotype
74Pav-HB-05-13_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015G5N/A53.79Rsweet_5_16642695View
2Sweet Cherry-RL-F1-2015L5N/A52.31Rsweet_5_16642695View
3Prunus-TE-6K cherry SNP-estimate5N/A44.05RosBREED_snp_sweet_cherry_Pp5_16642695View
4sweet cherry-consensus-map-2012-6K cherry SNP-estimate5N/A75.67RosBREED_snp_sweet_cherry_Pp5_16642695View
5Sweet Cherry-V-F1LG5N/A74.1RosBREED_snp_sweet_cherry_Pp5_16642695View
6Sweet Cherry-VxC-F1LG5N/A67.06RosBREED_snp_sweet_cherry_Pp5_16642695View
7Sweet Cherry-RosBREED-3.8K-20205N/A52.68RosBREED_snp_sweet_cherry_Pp5_16642695View
8Sweet Cherry-RosBREED-1.6K-20195N/A52.68RosBREED_snp_sweet_cherry_Pp5_16642695View
9Sweet Cherry-S-F15N/A56.97RosBREED_snp_sweet_cherry_Pp5_16642695View
10Sweet Cherry-AxS-F15N/A71.59RosBREED_snp_sweet_cherry_Pp5_16642695View
11Sweet Cherry-V-F1-6+9K_array5N/A58.33RosBREED_snp_sweet_cherry_Pp5_16642695View
12Sweet Cherry-VxC-F1-6+9K_array5N/A69.26RosBREED_snp_sweet_cherry_Pp5_16642695View
13Sweet Cherry-BTK-Kordia-2013LG05N/A61.3ss490554645View
14Sweet Cherry-BTK-F1-2013LG05N/A63ss490554645View
15Sweet Cherry-RL-F1-2013LG05N/A52.7ss490554645View
Alignments
Feature NameTypeLocationAnalysis
scaffold_5 supercontig scaffold_5:16642695..16642695. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp05 chromosome Pp05:16637402..16637402. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr5 chromosome PAV_r1.0chr5:15096542..15096542. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)