RosBREED_snp_sweet_cherry_Pp1_33379241, RosBREED_snp_sweet_cherry_Pp1_33379241 (genetic_marker) Prunus avium

Marker Overview
NameRosBREED_snp_sweet_cherry_Pp1_33379241
AliasRosBREED_snp_sweet_1_33379241
ss490547596
rs271786793
Rsweet_1_33379241
dbSNP IDss490547596
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_sweet_cherry_Pp1_33379241
TypeSNP
SNP AllelesT/C
SpeciesPrunus avium
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rsweet_1_33379241Rsweet_1_33379241Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp1_33379241RosBREED_snp_sweet_cherry_Pp1_33379241Prunus aviummarker_locus
ss490547596ss490547596Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp1_33379241RosBREED_snp_sweet_cherry_Pp1_33379241-101.67Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-01-29Pav-HB-01-29Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-01-29_2Prunus aviumhaplotype
3Pav-HB-01-29_3Prunus aviumhaplotype
4Pav-HB-01-29_4Prunus aviumhaplotype
5Pav-HB-01-29_5Prunus aviumhaplotype
6Pav-HB-01-29_6Prunus aviumhaplotype
7Pav-HB-01-29_7Prunus aviumhaplotype
8Pav-HB-01-29_8Prunus aviumhaplotype
9Pav-HB-01-29_9Prunus aviumhaplotype
10Pav-HB-01-29_10Prunus aviumhaplotype
11Pav-HB-01-29_11Prunus aviumhaplotype
12Pav-HB-01-29_12Prunus aviumhaplotype
13Pav-HB-01-29_13Prunus aviumhaplotype
14Pav-HB-01-29_14Prunus aviumhaplotype
15Pav-HB-01-29_15Prunus aviumhaplotype
16Pav-HB-01-29_16Prunus aviumhaplotype
17Pav-HB-01-29_17Prunus aviumhaplotype
18Pav-HB-01-29_18Prunus aviumhaplotype
19Pav-HB-01-29_19Prunus aviumhaplotype
20Pav-HB-01-29_20Prunus aviumhaplotype
21Pav-HB-01-29_21Prunus aviumhaplotype
22Pav-HB-01-29_22Prunus aviumhaplotype
23Pav-HB-01-29_23Prunus aviumhaplotype
24Pav-HB-01-29_24Prunus aviumhaplotype
25Pav-HB-01-29_25Prunus aviumhaplotype
26Pav-HB-01-29_26Prunus aviumhaplotype
27Pav-HB-01-29_27Prunus aviumhaplotype
28Pav-HB-01-29_28Prunus aviumhaplotype
29Pav-HB-01-29_29Prunus aviumhaplotype
30Pav-HB-01-29_30Prunus aviumhaplotype
31Pav-HB-01-29_31Prunus aviumhaplotype
32Pav-HB-01-29_32Prunus aviumhaplotype
33Pav-HB-01-29_33Prunus aviumhaplotype
34Pav-HB-01-29_34Prunus aviumhaplotype
35Pav-HB-01-29_35Prunus aviumhaplotype
36Pav-HB-01-29_36Prunus aviumhaplotype
37Pav-HB-01-29_37Prunus aviumhaplotype
38Pav-HB-01-29_38Prunus aviumhaplotype
39Pav-HB-01-29_39Prunus aviumhaplotype
40Pav-HB-01-29_40Prunus aviumhaplotype
41Pav-HB-01-29_41Prunus aviumhaplotype
42Pav-HB-01-29_42Prunus aviumhaplotype
43Pav-HB-01-29_43Prunus aviumhaplotype
44Pav-HB-01-29_44Prunus aviumhaplotype
45Pav-HB-01-29_45Prunus aviumhaplotype
46Pav-HB-01-29_46Prunus aviumhaplotype
47Pav-HB-01-29_47Prunus aviumhaplotype
48Pav-HB-01-29_48Prunus aviumhaplotype
49Pav-HB-01-29_49Prunus aviumhaplotype
50Pav-HB-01-29_50Prunus aviumhaplotype
51Pav-HB-01-29_51Prunus aviumhaplotype
52Pav-HB-01-29_52Prunus aviumhaplotype
53Pav-HB-01-29_53Prunus aviumhaplotype
54Pav-HB-01-29_54Prunus aviumhaplotype
55Pav-HB-01-29_55Prunus aviumhaplotype
56Pav-HB-01-29_56Prunus aviumhaplotype
57Pav-HB-01-29_57Prunus aviumhaplotype
58Pav-HB-01-29_58Prunus aviumhaplotype
59Pav-HB-01-29_59Prunus aviumhaplotype
60Pav-HB-01-29_60Prunus aviumhaplotype
61Pav-HB-01-29_61Prunus aviumhaplotype
62Pav-HB-01-29_62Prunus aviumhaplotype
63Pav-HB-01-29_63Prunus aviumhaplotype
64Pav-HB-01-29_64Prunus aviumhaplotype
65Pav-HB-01-29_65Prunus aviumhaplotype
66Pav-HB-01-29_66Prunus aviumhaplotype
67Pav-HB-01-29_67Prunus aviumhaplotype
68Pav-HB-01-29_68Prunus aviumhaplotype
69Pav-HB-01-29_69Prunus aviumhaplotype
70Pav-HB-01-29_70Prunus aviumhaplotype
71Pav-HB-01-29_71Prunus aviumhaplotype
72Pav-HB-01-29_72Prunus aviumhaplotype
73Pav-HB-01-29_73Prunus aviumhaplotype
74Pav-HB-01-29_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015G1N/A90.4Rsweet_1_33379241View
2Sweet Cherry-RL-F1-2015L1N/A98.96Rsweet_1_33379241View
3Prunus-TE-6K cherry SNP-estimate1N/A48.64RosBREED_snp_sweet_cherry_Pp1_33379241View
4sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A119.3RosBREED_snp_sweet_cherry_Pp1_33379241View
5Sweet Cherry-V-F1LG1N/A104.44RosBREED_snp_sweet_cherry_Pp1_33379241View
6Sweet Cherry-VxC-F1LG1N/A100.43RosBREED_snp_sweet_cherry_Pp1_33379241View
7Sweet Cherry-V-F1-6+9K_array1N/A93.25RosBREED_snp_sweet_cherry_Pp1_33379241View
8Sweet Cherry-RosBREED-3.8K-20201N/A102.45RosBREED_snp_sweet_cherry_Pp1_33379241View
9Sweet Cherry-RosBREED-1.6K-20191N/A101.67RosBREED_snp_sweet_cherry_Pp1_33379241View
10Sweet Cherry-A-F11N/A135.73RosBREED_snp_sweet_cherry_Pp1_33379241View
11Sweet Cherry-AxS-F11N/A130.81RosBREED_snp_sweet_cherry_Pp1_33379241View
12Sweet Cherry-VxC-F1-6+9K_array1N/A123.86RosBREED_snp_sweet_cherry_Pp1_33379241View
13Sweet Cherry-RL-Lapins-2013LG01N/A102.6ss490547596View
14Sweet Cherry-RL-F1-2013LG01N/A101.7ss490547596View
15Sour Cherry-M172x25-F1LG1N/A101.67RosBREED_snp_sweet_cherry_Pp1_33379241View
16SourCherry-Montx25-F1LG1N/A101.67RosBREED_snp_sweet_cherry_Pp1_33379241View
17SourCherry-25x25-F1LG1N/A101.67RosBREED_snp_sweet_cherry_Pp1_33379241View
18Sour Cherry-US-F1LG1N/A101.67RosBREED_snp_sweet_cherry_Pp1_33379241View
19SourCherry-RE-F1LG1N/A101.67RosBREED_snp_sweet_cherry_Pp1_33379241View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:33379241..33379241. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:34353083..34353083. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:28980659..28980659. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)