RosBREED_snp_sweet_cherry_Pp5_15559243, RosBREED_snp_sweet_cherry_Pp5_15559243 (genetic_marker) Prunus avium

Marker Overview
NameRosBREED_snp_sweet_cherry_Pp5_15559243
AliasRosBREED_snp_sweet_5_15559243
ss490554529
rs271788777
Rsweet_5_15559243
dbSNP IDss490554529
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_sweet_cherry_Pp5_15559243
TypeSNP
SNP AllelesT/C
SpeciesPrunus avium
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rsweet_5_15559243Rsweet_5_15559243Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp5_15559243RosBREED_snp_sweet_cherry_Pp5_15559243Prunus aviummarker_locus
ss490554529ss490554529Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp5_15559243RosBREED_snp_sweet_cherry_Pp5_15559243-48.26Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp5_15559243RosBREED_snp_sweet_cherry_Pp5_15559243-80.92Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-05-11Pav-HB-05-11Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-05-11_2Prunus aviumhaplotype
3Pav-HB-05-11_3Prunus aviumhaplotype
4Pav-HB-05-11_4Prunus aviumhaplotype
5Pav-HB-05-11_5Prunus aviumhaplotype
6Pav-HB-05-11_6Prunus aviumhaplotype
7Pav-HB-05-11_7Prunus aviumhaplotype
8Pav-HB-05-11_8Prunus aviumhaplotype
9Pav-HB-05-11_9Prunus aviumhaplotype
10Pav-HB-05-11_10Prunus aviumhaplotype
11Pav-HB-05-11_11Prunus aviumhaplotype
12Pav-HB-05-11_12Prunus aviumhaplotype
13Pav-HB-05-11_13Prunus aviumhaplotype
14Pav-HB-05-11_14Prunus aviumhaplotype
15Pav-HB-05-11_15Prunus aviumhaplotype
16Pav-HB-05-11_16Prunus aviumhaplotype
17Pav-HB-05-11_17Prunus aviumhaplotype
18Pav-HB-05-11_18Prunus aviumhaplotype
19Pav-HB-05-11_19Prunus aviumhaplotype
20Pav-HB-05-11_20Prunus aviumhaplotype
21Pav-HB-05-11_21Prunus aviumhaplotype
22Pav-HB-05-11_22Prunus aviumhaplotype
23Pav-HB-05-11_23Prunus aviumhaplotype
24Pav-HB-05-11_24Prunus aviumhaplotype
25Pav-HB-05-11_25Prunus aviumhaplotype
26Pav-HB-05-11_26Prunus aviumhaplotype
27Pav-HB-05-11_27Prunus aviumhaplotype
28Pav-HB-05-11_28Prunus aviumhaplotype
29Pav-HB-05-11_29Prunus aviumhaplotype
30Pav-HB-05-11_30Prunus aviumhaplotype
31Pav-HB-05-11_31Prunus aviumhaplotype
32Pav-HB-05-11_32Prunus aviumhaplotype
33Pav-HB-05-11_33Prunus aviumhaplotype
34Pav-HB-05-11_34Prunus aviumhaplotype
35Pav-HB-05-11_35Prunus aviumhaplotype
36Pav-HB-05-11_36Prunus aviumhaplotype
37Pav-HB-05-11_37Prunus aviumhaplotype
38Pav-HB-05-11_38Prunus aviumhaplotype
39Pav-HB-05-11_39Prunus aviumhaplotype
40Pav-HB-05-11_40Prunus aviumhaplotype
41Pav-HB-05-11_41Prunus aviumhaplotype
42Pav-HB-05-11_42Prunus aviumhaplotype
43Pav-HB-05-11_43Prunus aviumhaplotype
44Pav-HB-05-11_44Prunus aviumhaplotype
45Pav-HB-05-11_45Prunus aviumhaplotype
46Pav-HB-05-11_46Prunus aviumhaplotype
47Pav-HB-05-11_47Prunus aviumhaplotype
48Pav-HB-05-11_48Prunus aviumhaplotype
49Pav-HB-05-11_49Prunus aviumhaplotype
50Pav-HB-05-11_50Prunus aviumhaplotype
51Pav-HB-05-11_51Prunus aviumhaplotype
52Pav-HB-05-11_52Prunus aviumhaplotype
53Pav-HB-05-11_53Prunus aviumhaplotype
54Pav-HB-05-11_54Prunus aviumhaplotype
55Pav-HB-05-11_55Prunus aviumhaplotype
56Pav-HB-05-11_56Prunus aviumhaplotype
57Pav-HB-05-11_57Prunus aviumhaplotype
58Pav-HB-05-11_58Prunus aviumhaplotype
59Pav-HB-05-11_59Prunus aviumhaplotype
60Pav-HB-05-11_60Prunus aviumhaplotype
61Pav-HB-05-11_61Prunus aviumhaplotype
62Pav-HB-05-11_62Prunus aviumhaplotype
63Pav-HB-05-11_63Prunus aviumhaplotype
64Pav-HB-05-11_64Prunus aviumhaplotype
65Pav-HB-05-11_65Prunus aviumhaplotype
66Pav-HB-05-11_66Prunus aviumhaplotype
67Pav-HB-05-11_67Prunus aviumhaplotype
68Pav-HB-05-11_68Prunus aviumhaplotype
69Pav-HB-05-11_69Prunus aviumhaplotype
70Pav-HB-05-11_70Prunus aviumhaplotype
71Pav-HB-05-11_71Prunus aviumhaplotype
72Pav-HB-05-11_72Prunus aviumhaplotype
73Pav-HB-05-11_73Prunus aviumhaplotype
74Pav-HB-05-11_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RL-F1-2015R5N/A46.81Rsweet_5_15559243View
2Prunus-TE-6K cherry SNP-estimate5N/A38.02RosBREED_snp_sweet_cherry_Pp5_15559243View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate5N/A75.38RosBREED_snp_sweet_cherry_Pp5_15559243View
4Sweet Cherry-V-F1LG5N/A68.41RosBREED_snp_sweet_cherry_Pp5_15559243View
5Sweet Cherry-VxC-F1LG5N/A64.41RosBREED_snp_sweet_cherry_Pp5_15559243View
6Sweet Cherry-RL-F1-2014R5N/A48.3RosBREED_snp_sweet_cherry_Pp5_15559243View
7Sweet Cherry-RosBREED-3.8K-20205N/A48.26RosBREED_snp_sweet_cherry_Pp5_15559243View
8Sweet Cherry-RosBREED-1.6K-20195N/A48.26RosBREED_snp_sweet_cherry_Pp5_15559243View
9Sweet Cherry-V-F1-6+9K_array5N/A55.78RosBREED_snp_sweet_cherry_Pp5_15559243View
10Sweet Cherry-VxC-F1-6+9K_array5N/A64.53RosBREED_snp_sweet_cherry_Pp5_15559243View
11Sweet Cherry-RL-Regina-2013LG05N/A46.9ss490554529View
12Sweet Cherry-BTK-F1-2013LG05N/A55.8ss490554529View
13Sweet Cherry-RL-F1-2013LG05N/A48.3ss490554529View
14Sour Cherry-M172x25-F1LG5N/A48.26RosBREED_snp_sweet_cherry_Pp5_15559243View
15SourCherry-25x25-F1LG5N/A48.26RosBREED_snp_sweet_cherry_Pp5_15559243View
16SourCherry-RE-F1LG5N/A48.26RosBREED_snp_sweet_cherry_Pp5_15559243View
17SweetCherry-FX-F1-FercerF5N/A80.92RosBREED_snp_sweet_cherry_Pp5_15559243View
Alignments
Feature NameTypeLocationAnalysis
scaffold_5 supercontig scaffold_5:15559243..15559243. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp05 chromosome Pp05:15553950..15553950. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)