RosBREED_snp_sweet_cherry_Pp1_31975500, RosBREED_snp_sweet_cherry_Pp1_31975500 (genetic_marker) Prunus avium

Marker Overview
NameRosBREED_snp_sweet_cherry_Pp1_31975500
AliasRosBREED_snp_sweet_1_31975500
ss490547302
rs271786717
Rsweet_1_31975500
dbSNP IDss490547302
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_sweet_cherry_Pp1_31975500
TypeSNP
SNP AllelesA/G
SpeciesPrunus avium
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
GR:1:28-34GR:1:28-34Prunus cerasushaplotype_block
Pav-HB-01-28Pav-HB-01-28Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
aGR:1:28-34_aPrunus aviumhaplotype
bGR:1:28-34_bPrunus aviumhaplotype
cGR:1:28-34_cPrunus aviumhaplotype
dGR:1:28-34_dPrunus aviumhaplotype
eGR:1:28-34_ePrunus aviumhaplotype
fGR:1:28-34_fPrunus aviumhaplotype
gGR:1:28-34_gPrunus aviumhaplotype
hGR:1:28-34_hPrunus aviumhaplotype
iGR:1:28-34_iPrunus aviumhaplotype
jGR:1:28-34_jPrunus aviumhaplotype
kGR:1:28-34_kPrunus aviumhaplotype
lGR:1:28-34_lPrunus aviumhaplotype
mGR:1:28-34_mPrunus aviumhaplotype
nGR:1:28-34_nPrunus aviumhaplotype
oGR:1:28-34_oPrunus aviumhaplotype
pGR:1:28-34_pPrunus aviumhaplotype
qGR:1:28-34_qPrunus aviumhaplotype
rGR:1:28-34_rPrunus aviumhaplotype
sGR:1:28-34_sPrunus aviumhaplotype
x1GR:1:28-34_x1Prunus aviumhaplotype
x2GR:1:28-34_x2Prunus aviumhaplotype
x3GR:1:28-34_x3Prunus aviumhaplotype
x4GR:1:28-34_x4Prunus aviumhaplotype
x5GR:1:28-34_x5Prunus aviumhaplotype
x6GR:1:28-34_x6Prunus aviumhaplotype
x7GR:1:28-34_x7Prunus aviumhaplotype
x8GR:1:28-34_x8Prunus aviumhaplotype
d1GR:1:28-34_d1Prunus aviumhaplotype
d2GR:1:28-34_d2Prunus aviumhaplotype
d3GR:1:28-34_d3Prunus aviumhaplotype
d4GR:1:28-34_d4Prunus aviumhaplotype
1'GR:1:28-34_1'Prunus aviumhaplotype
4GR:1:28-34_4Prunus aviumhaplotype
6GR:1:28-34_6Prunus aviumhaplotype
13'GR:1:28-34_13'Prunus aviumhaplotype
13mGR:1:28-34_13mPrunus aviumhaplotype
14GR:1:28-34_14Prunus aviumhaplotype
16GR:1:28-34_16Prunus aviumhaplotype
34GR:1:28-34_34Prunus aviumhaplotype
35GR:1:28-34_35Prunus aviumhaplotype
36aGR:1:28-34_36aPrunus aviumhaplotype
36bGR:1:28-34_36bPrunus aviumhaplotype
36b2GR:1:28-34_36b2Prunus aviumhaplotype
2Pav-HB-01-28_2Prunus aviumhaplotype
3Pav-HB-01-28_3Prunus aviumhaplotype
4Pav-HB-01-28_4Prunus aviumhaplotype
5Pav-HB-01-28_5Prunus aviumhaplotype
6Pav-HB-01-28_6Prunus aviumhaplotype
7Pav-HB-01-28_7Prunus aviumhaplotype
8Pav-HB-01-28_8Prunus aviumhaplotype
9Pav-HB-01-28_9Prunus aviumhaplotype
10Pav-HB-01-28_10Prunus aviumhaplotype
11Pav-HB-01-28_11Prunus aviumhaplotype
12Pav-HB-01-28_12Prunus aviumhaplotype
13Pav-HB-01-28_13Prunus aviumhaplotype
14Pav-HB-01-28_14Prunus aviumhaplotype
15Pav-HB-01-28_15Prunus aviumhaplotype
16Pav-HB-01-28_16Prunus aviumhaplotype
17Pav-HB-01-28_17Prunus aviumhaplotype
18Pav-HB-01-28_18Prunus aviumhaplotype
19Pav-HB-01-28_19Prunus aviumhaplotype
20Pav-HB-01-28_20Prunus aviumhaplotype
21Pav-HB-01-28_21Prunus aviumhaplotype
22Pav-HB-01-28_22Prunus aviumhaplotype
23Pav-HB-01-28_23Prunus aviumhaplotype
24Pav-HB-01-28_24Prunus aviumhaplotype
25Pav-HB-01-28_25Prunus aviumhaplotype
26Pav-HB-01-28_26Prunus aviumhaplotype
27Pav-HB-01-28_27Prunus aviumhaplotype
28Pav-HB-01-28_28Prunus aviumhaplotype
29Pav-HB-01-28_29Prunus aviumhaplotype
30Pav-HB-01-28_30Prunus aviumhaplotype
31Pav-HB-01-28_31Prunus aviumhaplotype
32Pav-HB-01-28_32Prunus aviumhaplotype
33Pav-HB-01-28_33Prunus aviumhaplotype
34Pav-HB-01-28_34Prunus aviumhaplotype
35Pav-HB-01-28_35Prunus aviumhaplotype
36Pav-HB-01-28_36Prunus aviumhaplotype
37Pav-HB-01-28_37Prunus aviumhaplotype
38Pav-HB-01-28_38Prunus aviumhaplotype
39Pav-HB-01-28_39Prunus aviumhaplotype
40Pav-HB-01-28_40Prunus aviumhaplotype
41Pav-HB-01-28_41Prunus aviumhaplotype
42Pav-HB-01-28_42Prunus aviumhaplotype
43Pav-HB-01-28_43Prunus aviumhaplotype
44Pav-HB-01-28_44Prunus aviumhaplotype
45Pav-HB-01-28_45Prunus aviumhaplotype
46Pav-HB-01-28_46Prunus aviumhaplotype
47Pav-HB-01-28_47Prunus aviumhaplotype
48Pav-HB-01-28_48Prunus aviumhaplotype
49Pav-HB-01-28_49Prunus aviumhaplotype
50Pav-HB-01-28_50Prunus aviumhaplotype
51Pav-HB-01-28_51Prunus aviumhaplotype
52Pav-HB-01-28_52Prunus aviumhaplotype
53Pav-HB-01-28_53Prunus aviumhaplotype
54Pav-HB-01-28_54Prunus aviumhaplotype
55Pav-HB-01-28_55Prunus aviumhaplotype
56Pav-HB-01-28_56Prunus aviumhaplotype
57Pav-HB-01-28_57Prunus aviumhaplotype
58Pav-HB-01-28_58Prunus aviumhaplotype
59Pav-HB-01-28_59Prunus aviumhaplotype
60Pav-HB-01-28_60Prunus aviumhaplotype
61Pav-HB-01-28_61Prunus aviumhaplotype
62Pav-HB-01-28_62Prunus aviumhaplotype
63Pav-HB-01-28_63Prunus aviumhaplotype
64Pav-HB-01-28_64Prunus aviumhaplotype
65Pav-HB-01-28_65Prunus aviumhaplotype
66Pav-HB-01-28_66Prunus aviumhaplotype
67Pav-HB-01-28_67Prunus aviumhaplotype
68Pav-HB-01-28_68Prunus aviumhaplotype
69Pav-HB-01-28_69Prunus aviumhaplotype
70Pav-HB-01-28_70Prunus aviumhaplotype
71Pav-HB-01-28_71Prunus aviumhaplotype
72Pav-HB-01-28_72Prunus aviumhaplotype
73Pav-HB-01-28_73Prunus aviumhaplotype
74Pav-HB-01-28_74Prunus aviumhaplotype


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rsweet_1_31975500Rsweet_1_31975500Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp1_31975500RosBREED_snp_sweet_cherry_Pp1_31975500Prunus aviummarker_locus
ss490547302ss490547302Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp1_31975500RosBREED_snp_sweet_cherry_Pp1_31975500-92.42Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp1_31975500RosBREED_snp_sweet_cherry_Pp1_31975500-88.568Prunus aviummarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015R1N/A69.94Rsweet_1_31975500View
2Prunus-TE-6K cherry SNP-estimate1N/A44.18RosBREED_snp_sweet_cherry_Pp1_31975500View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A105.47RosBREED_snp_sweet_cherry_Pp1_31975500View
4Sweet Cherry-V-F1LG1N/A98.05RosBREED_snp_sweet_cherry_Pp1_31975500View
5Sweet Cherry-VxC-F1LG1N/A95.27RosBREED_snp_sweet_cherry_Pp1_31975500View
6Sweet Cherry-BCxBC-F2LG1N/A80.5RosBREED_snp_sweet_cherry_Pp1_31975500View
7Sweet Cherry-RG-F1-2014R1N/A77.4RosBREED_snp_sweet_cherry_Pp1_31975500View
8Sweet Cherry-V-F1-6+9K_array1N/A88.13RosBREED_snp_sweet_cherry_Pp1_31975500View
9Sweet Cherry-RosBREED-3.8K-20201N/A93.2RosBREED_snp_sweet_cherry_Pp1_31975500View
10Sweet Cherry-RosBREED-1.6K-20191N/A92.42RosBREED_snp_sweet_cherry_Pp1_31975500View
11Sweet Cherry-A-F11N/A128.09RosBREED_snp_sweet_cherry_Pp1_31975500View
12Sweet Cherry-AxS-F11N/A124.91RosBREED_snp_sweet_cherry_Pp1_31975500View
13Sweet Cherry-VxC-F1-6+9K_array1N/A118.74RosBREED_snp_sweet_cherry_Pp1_31975500View
14Sweet Cherry-RL-Regina-2013LG01N/A91.7ss490547302View
15Sweet Cherry-BTK-F1-2013LG01N/A100.6ss490547302View
16Sweet Cherry-RL-F1-2013LG01N/A92.4ss490547302View
17Sour Cherry-M172x25-F1LG1N/A92.42RosBREED_snp_sweet_cherry_Pp1_31975500View
18SourCherry-Montx25-F1LG1N/A92.42RosBREED_snp_sweet_cherry_Pp1_31975500View
19SourCherry-25x25-F1LG1N/A92.42RosBREED_snp_sweet_cherry_Pp1_31975500View
20Sour Cherry-US-F1LG1N/A92.42RosBREED_snp_sweet_cherry_Pp1_31975500View
21SourCherry-RE-F1LG1N/A92.42RosBREED_snp_sweet_cherry_Pp1_31975500View
22SweetCherry-FX-F1-XX1N/A88.57RosBREED_snp_sweet_cherry_Pp1_31975500View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:31975500..31975500. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:32949341..32949341. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:27460708..27460708. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)