RosCOS1537-126_snp_sweet_cherry_Pp8_19873713, RosCOS1537-126_snp_sweet_cherry_Pp8_19873713 (genetic_marker) Prunus avium

Marker Overview
NameRosCOS1537-126_snp_sweet_cherry_Pp8_19873713
AliasRosCOS1537-126_snp_sweet_8_19873713
ss490559130
rs271790304
R1537-126_8_19873713
dbSNP IDss490559130
SNP Array ID
IRSC 6K SNP array for cherry:RosCOS1537-126_snp_sweet_cherry_Pp8_19873713
TypeSNP
SNP AllelesT/C
SpeciesPrunus avium
Publication[view all]
Associated WithROSC_FMLY_CSA1_1537
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

This genetic_marker is associated with the following contig feature(s):

Feature NameUnique NameSpeciesType
ROSC_FMLY_CSA1_1537ROSC_FMLY_CSA1_1537Rosaceae Family Genera sp.contig


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
R1537-126_8_19873713R1537-126_8_19873713Prunus aviummarker_locus
RosCOS1537-126_snp_sweet_cherry_Pp8_19873713RosCOS1537-126_snp_sweet_cherry_Pp8_19873713Prunus aviummarker_locus
ss490559130ss490559130Prunus aviummarker_locus
RosCOS1537-126_snp_sweet_cherry_Pp8_19873713RosCOS1537-126_snp_sweet_cherry_Pp8_19873713-62.27Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-08-19Pav-HB-08-19Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-08-19_2Prunus aviumhaplotype
3Pav-HB-08-19_3Prunus aviumhaplotype
4Pav-HB-08-19_4Prunus aviumhaplotype
5Pav-HB-08-19_5Prunus aviumhaplotype
6Pav-HB-08-19_6Prunus aviumhaplotype
7Pav-HB-08-19_7Prunus aviumhaplotype
8Pav-HB-08-19_8Prunus aviumhaplotype
9Pav-HB-08-19_9Prunus aviumhaplotype
10Pav-HB-08-19_10Prunus aviumhaplotype
11Pav-HB-08-19_11Prunus aviumhaplotype
12Pav-HB-08-19_12Prunus aviumhaplotype
13Pav-HB-08-19_13Prunus aviumhaplotype
14Pav-HB-08-19_14Prunus aviumhaplotype
15Pav-HB-08-19_15Prunus aviumhaplotype
16Pav-HB-08-19_16Prunus aviumhaplotype
17Pav-HB-08-19_17Prunus aviumhaplotype
18Pav-HB-08-19_18Prunus aviumhaplotype
19Pav-HB-08-19_19Prunus aviumhaplotype
20Pav-HB-08-19_20Prunus aviumhaplotype
21Pav-HB-08-19_21Prunus aviumhaplotype
22Pav-HB-08-19_22Prunus aviumhaplotype
23Pav-HB-08-19_23Prunus aviumhaplotype
24Pav-HB-08-19_24Prunus aviumhaplotype
25Pav-HB-08-19_25Prunus aviumhaplotype
26Pav-HB-08-19_26Prunus aviumhaplotype
27Pav-HB-08-19_27Prunus aviumhaplotype
28Pav-HB-08-19_28Prunus aviumhaplotype
29Pav-HB-08-19_29Prunus aviumhaplotype
30Pav-HB-08-19_30Prunus aviumhaplotype
31Pav-HB-08-19_31Prunus aviumhaplotype
32Pav-HB-08-19_32Prunus aviumhaplotype
33Pav-HB-08-19_33Prunus aviumhaplotype
34Pav-HB-08-19_34Prunus aviumhaplotype
35Pav-HB-08-19_35Prunus aviumhaplotype
36Pav-HB-08-19_36Prunus aviumhaplotype
37Pav-HB-08-19_37Prunus aviumhaplotype
38Pav-HB-08-19_38Prunus aviumhaplotype
39Pav-HB-08-19_39Prunus aviumhaplotype
40Pav-HB-08-19_40Prunus aviumhaplotype
41Pav-HB-08-19_41Prunus aviumhaplotype
42Pav-HB-08-19_42Prunus aviumhaplotype
43Pav-HB-08-19_43Prunus aviumhaplotype
44Pav-HB-08-19_44Prunus aviumhaplotype
45Pav-HB-08-19_45Prunus aviumhaplotype
46Pav-HB-08-19_46Prunus aviumhaplotype
47Pav-HB-08-19_47Prunus aviumhaplotype
48Pav-HB-08-19_48Prunus aviumhaplotype
49Pav-HB-08-19_49Prunus aviumhaplotype
50Pav-HB-08-19_50Prunus aviumhaplotype
51Pav-HB-08-19_51Prunus aviumhaplotype
52Pav-HB-08-19_52Prunus aviumhaplotype
53Pav-HB-08-19_53Prunus aviumhaplotype
54Pav-HB-08-19_54Prunus aviumhaplotype
55Pav-HB-08-19_55Prunus aviumhaplotype
56Pav-HB-08-19_56Prunus aviumhaplotype
57Pav-HB-08-19_57Prunus aviumhaplotype
58Pav-HB-08-19_58Prunus aviumhaplotype
59Pav-HB-08-19_59Prunus aviumhaplotype
60Pav-HB-08-19_60Prunus aviumhaplotype
61Pav-HB-08-19_61Prunus aviumhaplotype
62Pav-HB-08-19_62Prunus aviumhaplotype
63Pav-HB-08-19_63Prunus aviumhaplotype
64Pav-HB-08-19_64Prunus aviumhaplotype
65Pav-HB-08-19_65Prunus aviumhaplotype
66Pav-HB-08-19_66Prunus aviumhaplotype
67Pav-HB-08-19_67Prunus aviumhaplotype
68Pav-HB-08-19_68Prunus aviumhaplotype
69Pav-HB-08-19_69Prunus aviumhaplotype
70Pav-HB-08-19_70Prunus aviumhaplotype
71Pav-HB-08-19_71Prunus aviumhaplotype
72Pav-HB-08-19_72Prunus aviumhaplotype
73Pav-HB-08-19_73Prunus aviumhaplotype
74Pav-HB-08-19_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015R8N/A55.77R1537-126_8_19873713View
2Sweet Cherry-RL-F1-2015R8N/A48.38R1537-126_8_19873713View
3Prunus-TE-6K cherry SNP-estimate8N/A53.59RosCOS1537-126_snp_sweet_cherry_Pp8_19873713View
4sweet cherry-consensus-map-2012-6K cherry SNP-estimate8N/A78.38RosCOS1537-126_snp_sweet_cherry_Pp8_19873713View
5Sweet Cherry-RG-F1-2014R8N/A60.1RosCOS1537-126_snp_sweet_cherry_Pp8_19873713View
6Sweet Cherry-RosBREED-1.6K-20198N/A62.27RosCOS1537-126_snp_sweet_cherry_Pp8_19873713View
7Sweet Cherry-RosBREED-3.8K-20208N/A62.27RosCOS1537-126_snp_sweet_cherry_Pp8_19873713View
8Sweet Cherry-BTK-Black Tartarian-2013LG08N/A80.4ss490559130View
9Sweet Cherry-RL-Regina-2013LG08N/A48ss490559130View
10Sweet Cherry-BTK-F1-2013LG08N/A80.6ss490559130View
11Sweet Cherry-RL-F1-2013LG08N/A62.3ss490559130View
12Sour Cherry-M172x25-F1LG8N/A62.27RosCOS1537-126_snp_sweet_cherry_Pp8_19873713View
13SourCherry-Montx25-F1LG8N/A62.27RosCOS1537-126_snp_sweet_cherry_Pp8_19873713View
14SourCherry-25x25-F1LG8N/A62.27RosCOS1537-126_snp_sweet_cherry_Pp8_19873713View
15Sour Cherry-US-F1LG8N/A62.27RosCOS1537-126_snp_sweet_cherry_Pp8_19873713View
16SourCherry-RE-F1LG8N/A62.27RosCOS1537-126_snp_sweet_cherry_Pp8_19873713View
Alignments
Feature NameTypeLocationAnalysis
scaffold_8 supercontig scaffold_8:19873713..19873713. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp08 chromosome Pp08:20618167..20618167. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)