RosBREED_snp_sweet_cherry_Pp8_03745450, RosBREED_snp_sweet_cherry_Pp8_03745450 (genetic_marker) Prunus avium

Marker Overview

Name

RosBREED_snp_sweet_cherry_Pp8_03745450

dbSNP ID

SNP Array ID

IRSC 6K SNP array for cherry:

RosBREED_snp_sweet_cherry_Pp8_03745450

Type

SNP

SNP Alleles

A/G

Species

Publication

Libraries


Library Name	Type
IRSC 6K SNP array for cherry	SNP_chip

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a1	2016-11-21

Publications


Year	Publication
2012	Peace C, Bassil N, Main D, Ficklin S, Rosyara UR, Stegmeir T, Sebolt A, Gilmore B, Lawley C, Mockler TC, Bryant DW, Wilhelm L, Iezzoni A. Development and evaluation of a genome-wide 6K SNP array for diploid sweet cherry and tetraploid sour cherry. PloS one. 2012; 7(12):e48305.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Sweet Cherry-RG-F1-2015	R8	N/A	8.78	Rsweet_8_03745450	View
2	Prunus-TE-6K cherry SNP-estimate	8	N/A	13.07	RosBREED_snp_sweet_cherry_Pp8_03745450	View
3	sweet cherry-consensus-map-2012-6K cherry SNP-estimate	8	N/A	9.05	RosBREED_snp_sweet_cherry_Pp8_03745450	View
4	Sweet Cherry-V-F1	LG8	N/A	17.54	RosBREED_snp_sweet_cherry_Pp8_03745450	View
5	Sweet Cherry-VxC-F1	LG8	N/A	12.06	RosBREED_snp_sweet_cherry_Pp8_03745450	View
6	Sweet Cherry-BCxBC-F2	LG8	N/A	6.79	RosBREED_snp_sweet_cherry_Pp8_03745450	View
7	Sweet Cherry-S-F1	8	N/A	9.9	RosBREED_snp_sweet_cherry_Pp8_03745450	View
8	Sweet Cherry-AxS-F1	8	N/A	14.18	RosBREED_snp_sweet_cherry_Pp8_03745450	View
9	Sweet Cherry-V-F1-6+9K_array	8	N/A	16.1	RosBREED_snp_sweet_cherry_Pp8_03745450	View
10	Sweet Cherry-VxC-F1-6+9K_array	8	N/A	15.48	RosBREED_snp_sweet_cherry_Pp8_03745450	View
11	SweetCherry-FX-F1-Fercer	F8	N/A	20.33	RosBREED_snp_sweet_cherry_Pp8_03745450	View
12	Sweet Cherry-RL-Regina-2013	LG08	N/A	3.9	ss490557845	View
13	Sweet Cherry-BTK-F1-2013	LG08	N/A	20.1	ss490557845	View
14	Sweet Cherry-RL-F1-2013	LG08	N/A	17.5	ss490557845	View

Alignments

Feature Name	Type	Location	Analysis
scaffold_8	supercontig	scaffold_8:3745450..3745450.	Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp08	chromosome	Pp08:3743581..3743581.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)