RosBREED_snp_sweet_cherry_Pp1_26215806, RosBREED_snp_sweet_cherry_Pp1_26215806 (genetic_marker) Prunus avium

Marker Overview
NameRosBREED_snp_sweet_cherry_Pp1_26215806
AliasRosBREED_snp_sweet_1_26215806
ss490547003
rs271786641
Rsweet_1_26215806
dbSNP IDss490547003
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_sweet_cherry_Pp1_26215806
TypeSNP
SNP AllelesA/G
SpeciesPrunus avium
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rsweet_1_26215806Rsweet_1_26215806Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp1_26215806RosBREED_snp_sweet_cherry_Pp1_26215806Prunus aviummarker_locus
ss490547003ss490547003Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-01-22Pav-HB-01-22Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-01-22_2Prunus aviumhaplotype
3Pav-HB-01-22_3Prunus aviumhaplotype
4Pav-HB-01-22_4Prunus aviumhaplotype
5Pav-HB-01-22_5Prunus aviumhaplotype
6Pav-HB-01-22_6Prunus aviumhaplotype
7Pav-HB-01-22_7Prunus aviumhaplotype
8Pav-HB-01-22_8Prunus aviumhaplotype
9Pav-HB-01-22_9Prunus aviumhaplotype
10Pav-HB-01-22_10Prunus aviumhaplotype
11Pav-HB-01-22_11Prunus aviumhaplotype
12Pav-HB-01-22_12Prunus aviumhaplotype
13Pav-HB-01-22_13Prunus aviumhaplotype
14Pav-HB-01-22_14Prunus aviumhaplotype
15Pav-HB-01-22_15Prunus aviumhaplotype
16Pav-HB-01-22_16Prunus aviumhaplotype
17Pav-HB-01-22_17Prunus aviumhaplotype
18Pav-HB-01-22_18Prunus aviumhaplotype
19Pav-HB-01-22_19Prunus aviumhaplotype
20Pav-HB-01-22_20Prunus aviumhaplotype
21Pav-HB-01-22_21Prunus aviumhaplotype
22Pav-HB-01-22_22Prunus aviumhaplotype
23Pav-HB-01-22_23Prunus aviumhaplotype
24Pav-HB-01-22_24Prunus aviumhaplotype
25Pav-HB-01-22_25Prunus aviumhaplotype
26Pav-HB-01-22_26Prunus aviumhaplotype
27Pav-HB-01-22_27Prunus aviumhaplotype
28Pav-HB-01-22_28Prunus aviumhaplotype
29Pav-HB-01-22_29Prunus aviumhaplotype
30Pav-HB-01-22_30Prunus aviumhaplotype
31Pav-HB-01-22_31Prunus aviumhaplotype
32Pav-HB-01-22_32Prunus aviumhaplotype
33Pav-HB-01-22_33Prunus aviumhaplotype
34Pav-HB-01-22_34Prunus aviumhaplotype
35Pav-HB-01-22_35Prunus aviumhaplotype
36Pav-HB-01-22_36Prunus aviumhaplotype
37Pav-HB-01-22_37Prunus aviumhaplotype
38Pav-HB-01-22_38Prunus aviumhaplotype
39Pav-HB-01-22_39Prunus aviumhaplotype
40Pav-HB-01-22_40Prunus aviumhaplotype
41Pav-HB-01-22_41Prunus aviumhaplotype
42Pav-HB-01-22_42Prunus aviumhaplotype
43Pav-HB-01-22_43Prunus aviumhaplotype
44Pav-HB-01-22_44Prunus aviumhaplotype
45Pav-HB-01-22_45Prunus aviumhaplotype
46Pav-HB-01-22_46Prunus aviumhaplotype
47Pav-HB-01-22_47Prunus aviumhaplotype
48Pav-HB-01-22_48Prunus aviumhaplotype
49Pav-HB-01-22_49Prunus aviumhaplotype
50Pav-HB-01-22_50Prunus aviumhaplotype
51Pav-HB-01-22_51Prunus aviumhaplotype
52Pav-HB-01-22_52Prunus aviumhaplotype
53Pav-HB-01-22_53Prunus aviumhaplotype
54Pav-HB-01-22_54Prunus aviumhaplotype
55Pav-HB-01-22_55Prunus aviumhaplotype
56Pav-HB-01-22_56Prunus aviumhaplotype
57Pav-HB-01-22_57Prunus aviumhaplotype
58Pav-HB-01-22_58Prunus aviumhaplotype
59Pav-HB-01-22_59Prunus aviumhaplotype
60Pav-HB-01-22_60Prunus aviumhaplotype
61Pav-HB-01-22_61Prunus aviumhaplotype
62Pav-HB-01-22_62Prunus aviumhaplotype
63Pav-HB-01-22_63Prunus aviumhaplotype
64Pav-HB-01-22_64Prunus aviumhaplotype
65Pav-HB-01-22_65Prunus aviumhaplotype
66Pav-HB-01-22_66Prunus aviumhaplotype
67Pav-HB-01-22_67Prunus aviumhaplotype
68Pav-HB-01-22_68Prunus aviumhaplotype
69Pav-HB-01-22_69Prunus aviumhaplotype
70Pav-HB-01-22_70Prunus aviumhaplotype
71Pav-HB-01-22_71Prunus aviumhaplotype
72Pav-HB-01-22_72Prunus aviumhaplotype
73Pav-HB-01-22_73Prunus aviumhaplotype
74Pav-HB-01-22_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015R1N/A54.68Rsweet_1_26215806View
2Sweet Cherry-RL-F1-2015R1N/A74.06Rsweet_1_26215806View
3Prunus-TE-6K cherry SNP-estimate1N/A35.13RosBREED_snp_sweet_cherry_Pp1_26215806View
4sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A92.98RosBREED_snp_sweet_cherry_Pp1_26215806View
5Sweet Cherry-V-F1LG1N/A73.88RosBREED_snp_sweet_cherry_Pp1_26215806View
6Sweet Cherry-VxC-F1LG1N/A73.3RosBREED_snp_sweet_cherry_Pp1_26215806View
7Sweet Cherry-RL-F1-2014R1N/A80.6RosBREED_snp_sweet_cherry_Pp1_26215806View
8Sweet Cherry-V-F1-6+9K_array1N/A66.1RosBREED_snp_sweet_cherry_Pp1_26215806View
9Sweet Cherry-RosBREED-3.8K-20201N/A75.3RosBREED_snp_sweet_cherry_Pp1_26215806View
10Sweet Cherry-RosBREED-1.6K-20191N/A74.52RosBREED_snp_sweet_cherry_Pp1_26215806View
11Sweet Cherry-A-F11N/A94.77RosBREED_snp_sweet_cherry_Pp1_26215806View
12Sweet Cherry-AxS-F11N/A93.73RosBREED_snp_sweet_cherry_Pp1_26215806View
13Sweet Cherry-VxC-F1-6+9K_array1N/A96.7RosBREED_snp_sweet_cherry_Pp1_26215806View
14Sweet Cherry-BTK-Kordia-2013LG01N/A106.9ss490547003View
15Sweet Cherry-RL-Regina-2013LG01N/A74.3ss490547003View
16Sweet Cherry-BTK-F1-2013LG01N/A76.7ss490547003View
17Sweet Cherry-RL-F1-2013LG01N/A74.5ss490547003View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:26215806..26215806. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:27190409..27190409. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:21153741..21153741. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)