RosBREED_snp_sweet_cherry_Pp5_15817487, RosBREED_snp_sweet_cherry_Pp5_15817487 (genetic_marker) Prunus avium

Marker Overview
NameRosBREED_snp_sweet_cherry_Pp5_15817487
AliasRosBREED_snp_sweet_5_15817487
ss490554550
rs271788784
Rsweet_5_15817487
dbSNP IDss490554550
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_sweet_cherry_Pp5_15817487
TypeSNP
SNP AllelesA/G
SpeciesPrunus avium
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rsweet_5_15817487Rsweet_5_15817487Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp5_15817487RosBREED_snp_sweet_cherry_Pp5_15817487Prunus aviummarker_locus
ss490554550ss490554550Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-05-12Pav-HB-05-12Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-05-12_2Prunus aviumhaplotype
3Pav-HB-05-12_3Prunus aviumhaplotype
4Pav-HB-05-12_4Prunus aviumhaplotype
5Pav-HB-05-12_5Prunus aviumhaplotype
6Pav-HB-05-12_6Prunus aviumhaplotype
7Pav-HB-05-12_7Prunus aviumhaplotype
8Pav-HB-05-12_8Prunus aviumhaplotype
9Pav-HB-05-12_9Prunus aviumhaplotype
10Pav-HB-05-12_10Prunus aviumhaplotype
11Pav-HB-05-12_11Prunus aviumhaplotype
12Pav-HB-05-12_12Prunus aviumhaplotype
13Pav-HB-05-12_13Prunus aviumhaplotype
14Pav-HB-05-12_14Prunus aviumhaplotype
15Pav-HB-05-12_15Prunus aviumhaplotype
16Pav-HB-05-12_16Prunus aviumhaplotype
17Pav-HB-05-12_17Prunus aviumhaplotype
18Pav-HB-05-12_18Prunus aviumhaplotype
19Pav-HB-05-12_19Prunus aviumhaplotype
20Pav-HB-05-12_20Prunus aviumhaplotype
21Pav-HB-05-12_21Prunus aviumhaplotype
22Pav-HB-05-12_22Prunus aviumhaplotype
23Pav-HB-05-12_23Prunus aviumhaplotype
24Pav-HB-05-12_24Prunus aviumhaplotype
25Pav-HB-05-12_25Prunus aviumhaplotype
26Pav-HB-05-12_26Prunus aviumhaplotype
27Pav-HB-05-12_27Prunus aviumhaplotype
28Pav-HB-05-12_28Prunus aviumhaplotype
29Pav-HB-05-12_29Prunus aviumhaplotype
30Pav-HB-05-12_30Prunus aviumhaplotype
31Pav-HB-05-12_31Prunus aviumhaplotype
32Pav-HB-05-12_32Prunus aviumhaplotype
33Pav-HB-05-12_33Prunus aviumhaplotype
34Pav-HB-05-12_34Prunus aviumhaplotype
35Pav-HB-05-12_35Prunus aviumhaplotype
36Pav-HB-05-12_36Prunus aviumhaplotype
37Pav-HB-05-12_37Prunus aviumhaplotype
38Pav-HB-05-12_38Prunus aviumhaplotype
39Pav-HB-05-12_39Prunus aviumhaplotype
40Pav-HB-05-12_40Prunus aviumhaplotype
41Pav-HB-05-12_41Prunus aviumhaplotype
42Pav-HB-05-12_42Prunus aviumhaplotype
43Pav-HB-05-12_43Prunus aviumhaplotype
44Pav-HB-05-12_44Prunus aviumhaplotype
45Pav-HB-05-12_45Prunus aviumhaplotype
46Pav-HB-05-12_46Prunus aviumhaplotype
47Pav-HB-05-12_47Prunus aviumhaplotype
48Pav-HB-05-12_48Prunus aviumhaplotype
49Pav-HB-05-12_49Prunus aviumhaplotype
50Pav-HB-05-12_50Prunus aviumhaplotype
51Pav-HB-05-12_51Prunus aviumhaplotype
52Pav-HB-05-12_52Prunus aviumhaplotype
53Pav-HB-05-12_53Prunus aviumhaplotype
54Pav-HB-05-12_54Prunus aviumhaplotype
55Pav-HB-05-12_55Prunus aviumhaplotype
56Pav-HB-05-12_56Prunus aviumhaplotype
57Pav-HB-05-12_57Prunus aviumhaplotype
58Pav-HB-05-12_58Prunus aviumhaplotype
59Pav-HB-05-12_59Prunus aviumhaplotype
60Pav-HB-05-12_60Prunus aviumhaplotype
61Pav-HB-05-12_61Prunus aviumhaplotype
62Pav-HB-05-12_62Prunus aviumhaplotype
63Pav-HB-05-12_63Prunus aviumhaplotype
64Pav-HB-05-12_64Prunus aviumhaplotype
65Pav-HB-05-12_65Prunus aviumhaplotype
66Pav-HB-05-12_66Prunus aviumhaplotype
67Pav-HB-05-12_67Prunus aviumhaplotype
68Pav-HB-05-12_68Prunus aviumhaplotype
69Pav-HB-05-12_69Prunus aviumhaplotype
70Pav-HB-05-12_70Prunus aviumhaplotype
71Pav-HB-05-12_71Prunus aviumhaplotype
72Pav-HB-05-12_72Prunus aviumhaplotype
73Pav-HB-05-12_73Prunus aviumhaplotype
74Pav-HB-05-12_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RL-F1-2015L5N/A48.98Rsweet_5_15817487View
2Prunus-TE-6K cherry SNP-estimate5N/A39.47RosBREED_snp_sweet_cherry_Pp5_15817487View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate5N/A75.43RosBREED_snp_sweet_cherry_Pp5_15817487View
4Sweet Cherry-V-F1LG5N/A69.67RosBREED_snp_sweet_cherry_Pp5_15817487View
5Sweet Cherry-VxC-F1LG5N/A64.41RosBREED_snp_sweet_cherry_Pp5_15817487View
6Sweet Cherry-RL-F1-2014L5N/A51.2RosBREED_snp_sweet_cherry_Pp5_15817487View
7Sweet Cherry-RosBREED-3.8K-20205N/A49.25RosBREED_snp_sweet_cherry_Pp5_15817487View
8Sweet Cherry-RosBREED-1.6K-20195N/A49.25RosBREED_snp_sweet_cherry_Pp5_15817487View
9Sweet Cherry-S-F15N/A49.16RosBREED_snp_sweet_cherry_Pp5_15817487View
10Sweet Cherry-AxS-F15N/A63.78RosBREED_snp_sweet_cherry_Pp5_15817487View
11Sweet Cherry-V-F1-6+9K_array5N/A56.42RosBREED_snp_sweet_cherry_Pp5_15817487View
12Sweet Cherry-VxC-F1-6+9K_array5N/A66.81RosBREED_snp_sweet_cherry_Pp5_15817487View
13Sweet Cherry-RL-Lapins-2013LG05N/A48.6ss490554550View
14Sweet Cherry-RL-F1-2013LG05N/A49.2ss490554550View
Alignments
Feature NameTypeLocationAnalysis
scaffold_5 supercontig scaffold_5:15817487..15817487. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp05 chromosome Pp05:15812193..15812193. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr5 chromosome PAV_r1.0chr5:14238449..14238449. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)