RosCOS1328-366_snp_sweet_cherry_Pp2_22162942, RosCOS1328-366_snp_sweet_cherry_Pp2_22162942 (genetic_marker) Prunus avium

Marker Overview
NameRosCOS1328-366_snp_sweet_cherry_Pp2_22162942
dbSNP IDss490559042
SNP Array ID
IRSC 6K SNP array for cherry:RosCOS1328-366_snp_sweet_cherry_Pp2_22162942
TypeSNP
SNP AllelesA/G
SpeciesPrunus avium
Publication[view all]
ContactPere Arus
Associated WithROSC_FMLY_CSA1_1328
Contact
NameDetails
Pere Arus
First name:Pere
Last name:Arus
Title:Researcher
Institution:IRTA
Address:IRTA, Centre de Recerca en Agrigeno`mica CSIC-IRTA-UAB-UB; Campus UAB, Bellaterra (Cerdanyola del Valle`s), 08193 Barcelona, Spain
Country:Spain
Email:pere.arus@irta.cat
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RL-F1-2015L2N/A60.87R1328-366_2_22162942View
2Prunus-TE-6K cherry SNP-estimate2N/A37.75RosCOS1328-366_snp_sweet_cherry_Pp2_22162942View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate2N/A55.2RosCOS1328-366_snp_sweet_cherry_Pp2_22162942View
4Sweet Cherry-RosBREED-1.6K-20192N/A59.9RosCOS1328-366_snp_sweet_cherry_Pp2_22162942View
5Sweet Cherry-RosBREED-3.8K-20202N/A60.16RosCOS1328-366_snp_sweet_cherry_Pp2_22162942View
6Sweet Cherry-S-F12N/A65.15RosCOS1328-366_snp_sweet_cherry_Pp2_22162942View
7Sweet Cherry-AxS-F12N/A67.86RosCOS1328-366_snp_sweet_cherry_Pp2_22162942View
8Sweet_Cherry-Crump-panel-20222N/A60.16RosCOS1328-366_snp_sweet_cherry_Pp2_22162942View
9Sweet Cherry-RL-Lapins-2023L2N/A68.38RosCOS1328-366_snp_sweet_cherry_Pp2_22162942View
10Prunus-TE-BC1-T1EG2_T1EN/A31.3RosCOS1328-366View
11Sweet Cherry-RL-F1-2014L2N/A63RosCOS1328-366_snp_sweet_cherry_Pp2_22162942View
12Sour Cherry-M172x25-F1LG2N/A59.9RosCOS1328-366_snp_sweet_cherry_Pp2_22162942View
13SourCherry-Montx25-F1LG2N/A59.9RosCOS1328-366_snp_sweet_cherry_Pp2_22162942View
14SourCherry-25x25-F1LG2N/A59.9RosCOS1328-366_snp_sweet_cherry_Pp2_22162942View
15Sour Cherry-US-F1LG2N/A59.9RosCOS1328-366_snp_sweet_cherry_Pp2_22162942View
16SourCherry-RE-F1LG2N/A59.9RosCOS1328-366_snp_sweet_cherry_Pp2_22162942View
17Sweet Cherry-BTK-Black Tartarian-2013LG02N/A62.9ss490559042View
18Sweet Cherry-RL-Lapins-2013LG02N/A57ss490559042View
19Sweet Cherry-BTK-F1-2013LG02N/A62.5ss490559042View
20Sweet Cherry-RL-F1-2013LG02N/A59.9ss490559042View
Alignments
Feature NameTypeLocationAnalysis
scaffold_2 supercontig scaffold_2:22162942..22162942. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp02 chromosome Pp02:25737898..25737898. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr2 chromosome PAV_r1.0chr2:20081759..20081759. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)