RosCOS1328-366_snp_sweet_cherry_Pp2_22162942, RosCOS1328-366_snp_sweet_cherry_Pp2_22162942 (genetic_marker) Prunus avium

Marker Overview
NameRosCOS1328-366_snp_sweet_cherry_Pp2_22162942
AliasRosCOS1328-366_snp_sweet_2_22162942
ss490559042
rs271790274
R1328-366_2_22162942
RosCOS1328_366
RC1328_366
dbSNP IDss490559042
SNP Array ID
IRSC 6K SNP array for cherry:RosCOS1328-366_snp_sweet_cherry_Pp2_22162942
TypeSNP
SNP AllelesA/G
SpeciesPrunus avium
Publication[view all]
ContactPere Arus
Associated WithROSC_FMLY_CSA1_1328
Contact
NameDetails
Pere Arus
First name:Pere
Last name:Arus
Title:Researcher
Institution:IRTA
Address:IRTA, Centre de Recerca en Agrigeno`mica CSIC-IRTA-UAB-UB; Campus UAB, Bellaterra (Cerdanyola del Valle`s), 08193 Barcelona, Spain
Country:Spain
Email:pere.arus@irta.cat
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

This genetic_marker is associated with the following contig feature(s):

Feature NameUnique NameSpeciesType
ROSC_FMLY_CSA1_1328ROSC_FMLY_CSA1_1328Rosaceae Family Genera sp.contig


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
R1328-366_2_22162942R1328-366_2_22162942Prunus aviummarker_locus
RosCOS1328-366_snp_sweet_cherry_Pp2_22162942RosCOS1328-366_snp_sweet_cherry_Pp2_22162942Prunus aviummarker_locus
RosCOS1328-366_snp_sweet_cherry_Pp2_22162942RosCOS1328-366_snp_sweet_cherry_Pp2_22162942Prunus spp.marker_locus
RosCOS1328-366RosCOS1328-366Prunus spp.marker_locus
ss490559042ss490559042Prunus aviummarker_locus
RosCOS1328-366_snp_sweet_cherry_Pp2_22162942RosCOS1328-366_snp_sweet_cherry_Pp2_22162942-59.9Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-02-17Pav-HB-02-17Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-02-17_2Prunus aviumhaplotype
3Pav-HB-02-17_3Prunus aviumhaplotype
4Pav-HB-02-17_4Prunus aviumhaplotype
5Pav-HB-02-17_5Prunus aviumhaplotype
6Pav-HB-02-17_6Prunus aviumhaplotype
7Pav-HB-02-17_7Prunus aviumhaplotype
8Pav-HB-02-17_8Prunus aviumhaplotype
9Pav-HB-02-17_9Prunus aviumhaplotype
10Pav-HB-02-17_10Prunus aviumhaplotype
11Pav-HB-02-17_11Prunus aviumhaplotype
12Pav-HB-02-17_12Prunus aviumhaplotype
13Pav-HB-02-17_13Prunus aviumhaplotype
14Pav-HB-02-17_14Prunus aviumhaplotype
15Pav-HB-02-17_15Prunus aviumhaplotype
16Pav-HB-02-17_16Prunus aviumhaplotype
17Pav-HB-02-17_17Prunus aviumhaplotype
18Pav-HB-02-17_18Prunus aviumhaplotype
19Pav-HB-02-17_19Prunus aviumhaplotype
20Pav-HB-02-17_20Prunus aviumhaplotype
21Pav-HB-02-17_21Prunus aviumhaplotype
22Pav-HB-02-17_22Prunus aviumhaplotype
23Pav-HB-02-17_23Prunus aviumhaplotype
24Pav-HB-02-17_24Prunus aviumhaplotype
25Pav-HB-02-17_25Prunus aviumhaplotype
26Pav-HB-02-17_26Prunus aviumhaplotype
27Pav-HB-02-17_27Prunus aviumhaplotype
28Pav-HB-02-17_28Prunus aviumhaplotype
29Pav-HB-02-17_29Prunus aviumhaplotype
30Pav-HB-02-17_30Prunus aviumhaplotype
31Pav-HB-02-17_31Prunus aviumhaplotype
32Pav-HB-02-17_32Prunus aviumhaplotype
33Pav-HB-02-17_33Prunus aviumhaplotype
34Pav-HB-02-17_34Prunus aviumhaplotype
35Pav-HB-02-17_35Prunus aviumhaplotype
36Pav-HB-02-17_36Prunus aviumhaplotype
37Pav-HB-02-17_37Prunus aviumhaplotype
38Pav-HB-02-17_38Prunus aviumhaplotype
39Pav-HB-02-17_39Prunus aviumhaplotype
40Pav-HB-02-17_40Prunus aviumhaplotype
41Pav-HB-02-17_41Prunus aviumhaplotype
42Pav-HB-02-17_42Prunus aviumhaplotype
43Pav-HB-02-17_43Prunus aviumhaplotype
44Pav-HB-02-17_44Prunus aviumhaplotype
45Pav-HB-02-17_45Prunus aviumhaplotype
46Pav-HB-02-17_46Prunus aviumhaplotype
47Pav-HB-02-17_47Prunus aviumhaplotype
48Pav-HB-02-17_48Prunus aviumhaplotype
49Pav-HB-02-17_49Prunus aviumhaplotype
50Pav-HB-02-17_50Prunus aviumhaplotype
51Pav-HB-02-17_51Prunus aviumhaplotype
52Pav-HB-02-17_52Prunus aviumhaplotype
53Pav-HB-02-17_53Prunus aviumhaplotype
54Pav-HB-02-17_54Prunus aviumhaplotype
55Pav-HB-02-17_55Prunus aviumhaplotype
56Pav-HB-02-17_56Prunus aviumhaplotype
57Pav-HB-02-17_57Prunus aviumhaplotype
58Pav-HB-02-17_58Prunus aviumhaplotype
59Pav-HB-02-17_59Prunus aviumhaplotype
60Pav-HB-02-17_60Prunus aviumhaplotype
61Pav-HB-02-17_61Prunus aviumhaplotype
62Pav-HB-02-17_62Prunus aviumhaplotype
63Pav-HB-02-17_63Prunus aviumhaplotype
64Pav-HB-02-17_64Prunus aviumhaplotype
65Pav-HB-02-17_65Prunus aviumhaplotype
66Pav-HB-02-17_66Prunus aviumhaplotype
67Pav-HB-02-17_67Prunus aviumhaplotype
68Pav-HB-02-17_68Prunus aviumhaplotype
69Pav-HB-02-17_69Prunus aviumhaplotype
70Pav-HB-02-17_70Prunus aviumhaplotype
71Pav-HB-02-17_71Prunus aviumhaplotype
72Pav-HB-02-17_72Prunus aviumhaplotype
73Pav-HB-02-17_73Prunus aviumhaplotype
74Pav-HB-02-17_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RL-F1-2015L2N/A60.87R1328-366_2_22162942View
2Prunus-TE-6K cherry SNP-estimate2N/A37.75RosCOS1328-366_snp_sweet_cherry_Pp2_22162942View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate2N/A55.2RosCOS1328-366_snp_sweet_cherry_Pp2_22162942View
4Sweet Cherry-RosBREED-1.6K-20192N/A59.9RosCOS1328-366_snp_sweet_cherry_Pp2_22162942View
5Sweet Cherry-RosBREED-3.8K-20202N/A60.16RosCOS1328-366_snp_sweet_cherry_Pp2_22162942View
6Sweet Cherry-S-F12N/A65.15RosCOS1328-366_snp_sweet_cherry_Pp2_22162942View
7Sweet Cherry-AxS-F12N/A67.86RosCOS1328-366_snp_sweet_cherry_Pp2_22162942View
8Sweet Cherry-RL-F1-2014L2N/A63RosCOS1328-366_snp_sweet_cherry_Pp2_22162942View
9Prunus-TE-BC1-T1EG2_T1EN/A31.3RosCOS1328-366View
10Sweet Cherry-BTK-Black Tartarian-2013LG02N/A62.9ss490559042View
11Sweet Cherry-RL-Lapins-2013LG02N/A57ss490559042View
12Sweet Cherry-BTK-F1-2013LG02N/A62.5ss490559042View
13Sweet Cherry-RL-F1-2013LG02N/A59.9ss490559042View
14Sour Cherry-M172x25-F1LG2N/A59.9RosCOS1328-366_snp_sweet_cherry_Pp2_22162942View
15SourCherry-Montx25-F1LG2N/A59.9RosCOS1328-366_snp_sweet_cherry_Pp2_22162942View
16SourCherry-25x25-F1LG2N/A59.9RosCOS1328-366_snp_sweet_cherry_Pp2_22162942View
17Sour Cherry-US-F1LG2N/A59.9RosCOS1328-366_snp_sweet_cherry_Pp2_22162942View
18SourCherry-RE-F1LG2N/A59.9RosCOS1328-366_snp_sweet_cherry_Pp2_22162942View
Alignments
Feature NameTypeLocationAnalysis
scaffold_2 supercontig scaffold_2:22162942..22162942. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp02 chromosome Pp02:25737898..25737898. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr2 chromosome PAV_r1.0chr2:20081759..20081759. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)