RosBREED_snp_tart_cherry_a_Pp1_11102635, RosBREED_snp_tart_cherry_a_Pp1_11102635 (genetic_marker) Prunus cerasus

Marker Overview
NameRosBREED_snp_tart_cherry_a_Pp1_11102635
AliasRosBREED_snp_tart_1_11102635
ss490546068
rs268600244
Rtart_1_11102635
dbSNP IDss490546068
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_tart_cherry_a_Pp1_11102635
TypeSNP
SNP AllelesA/C
SpeciesPrunus cerasus
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rtart_1_11102635Rtart_1_11102635Prunus cerasusmarker_locus
RosBREED_snp_tart_cherry_a_Pp1_11102635RosBREED_snp_tart_cherry_a_Pp1_11102635Prunus cerasusmarker_locus
ss490546068ss490546068Prunus cerasusmarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-01-12Pav-HB-01-12Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-01-12_2Prunus cerasushaplotype
3Pav-HB-01-12_3Prunus cerasushaplotype
4Pav-HB-01-12_4Prunus cerasushaplotype
5Pav-HB-01-12_5Prunus cerasushaplotype
6Pav-HB-01-12_6Prunus cerasushaplotype
7Pav-HB-01-12_7Prunus cerasushaplotype
8Pav-HB-01-12_8Prunus cerasushaplotype
9Pav-HB-01-12_9Prunus cerasushaplotype
10Pav-HB-01-12_10Prunus cerasushaplotype
11Pav-HB-01-12_11Prunus cerasushaplotype
12Pav-HB-01-12_12Prunus cerasushaplotype
13Pav-HB-01-12_13Prunus cerasushaplotype
14Pav-HB-01-12_14Prunus cerasushaplotype
15Pav-HB-01-12_15Prunus cerasushaplotype
16Pav-HB-01-12_16Prunus cerasushaplotype
17Pav-HB-01-12_17Prunus cerasushaplotype
18Pav-HB-01-12_18Prunus cerasushaplotype
19Pav-HB-01-12_19Prunus cerasushaplotype
20Pav-HB-01-12_20Prunus cerasushaplotype
21Pav-HB-01-12_21Prunus cerasushaplotype
22Pav-HB-01-12_22Prunus cerasushaplotype
23Pav-HB-01-12_23Prunus cerasushaplotype
24Pav-HB-01-12_24Prunus cerasushaplotype
25Pav-HB-01-12_25Prunus cerasushaplotype
26Pav-HB-01-12_26Prunus cerasushaplotype
27Pav-HB-01-12_27Prunus cerasushaplotype
28Pav-HB-01-12_28Prunus cerasushaplotype
29Pav-HB-01-12_29Prunus cerasushaplotype
30Pav-HB-01-12_30Prunus cerasushaplotype
31Pav-HB-01-12_31Prunus cerasushaplotype
32Pav-HB-01-12_32Prunus cerasushaplotype
33Pav-HB-01-12_33Prunus cerasushaplotype
34Pav-HB-01-12_34Prunus cerasushaplotype
35Pav-HB-01-12_35Prunus cerasushaplotype
36Pav-HB-01-12_36Prunus cerasushaplotype
37Pav-HB-01-12_37Prunus cerasushaplotype
38Pav-HB-01-12_38Prunus cerasushaplotype
39Pav-HB-01-12_39Prunus cerasushaplotype
40Pav-HB-01-12_40Prunus cerasushaplotype
41Pav-HB-01-12_41Prunus cerasushaplotype
42Pav-HB-01-12_42Prunus cerasushaplotype
43Pav-HB-01-12_43Prunus cerasushaplotype
44Pav-HB-01-12_44Prunus cerasushaplotype
45Pav-HB-01-12_45Prunus cerasushaplotype
46Pav-HB-01-12_46Prunus cerasushaplotype
47Pav-HB-01-12_47Prunus cerasushaplotype
48Pav-HB-01-12_48Prunus cerasushaplotype
49Pav-HB-01-12_49Prunus cerasushaplotype
50Pav-HB-01-12_50Prunus cerasushaplotype
51Pav-HB-01-12_51Prunus cerasushaplotype
52Pav-HB-01-12_52Prunus cerasushaplotype
53Pav-HB-01-12_53Prunus cerasushaplotype
54Pav-HB-01-12_54Prunus cerasushaplotype
55Pav-HB-01-12_55Prunus cerasushaplotype
56Pav-HB-01-12_56Prunus cerasushaplotype
57Pav-HB-01-12_57Prunus cerasushaplotype
58Pav-HB-01-12_58Prunus cerasushaplotype
59Pav-HB-01-12_59Prunus cerasushaplotype
60Pav-HB-01-12_60Prunus cerasushaplotype
61Pav-HB-01-12_61Prunus cerasushaplotype
62Pav-HB-01-12_62Prunus cerasushaplotype
63Pav-HB-01-12_63Prunus cerasushaplotype
64Pav-HB-01-12_64Prunus cerasushaplotype
65Pav-HB-01-12_65Prunus cerasushaplotype
66Pav-HB-01-12_66Prunus cerasushaplotype
67Pav-HB-01-12_67Prunus cerasushaplotype
68Pav-HB-01-12_68Prunus cerasushaplotype
69Pav-HB-01-12_69Prunus cerasushaplotype
70Pav-HB-01-12_70Prunus cerasushaplotype
71Pav-HB-01-12_71Prunus cerasushaplotype
72Pav-HB-01-12_72Prunus cerasushaplotype
73Pav-HB-01-12_73Prunus cerasushaplotype
74Pav-HB-01-12_74Prunus cerasushaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RL-F1-2015R1N/A40.72Rtart_1_11102635View
2Prunus-TE-6K cherry SNP-estimate1N/A14.46RosBREED_snp_tart_cherry_a_Pp1_11102635View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A61.18RosBREED_snp_tart_cherry_a_Pp1_11102635View
4Sweet Cherry-C-F1LG1N/A25.46RosBREED_snp_tart_cherry_a_Pp1_11102635View
5Sweet Cherry-VxC-F1LG1N/A43.12RosBREED_snp_tart_cherry_a_Pp1_11102635View
6Sweet Cherry-CxC-F2LG1N/A20.13RosBREED_snp_tart_cherry_a_Pp1_11102635View
7Sweet Cherry-BCxBC-F2LG1N/A32.09RosBREED_snp_tart_cherry_a_Pp1_11102635View
8Sweet Cherry-RosBREED-3.8K-20201N/A42.19RosBREED_snp_tart_cherry_a_Pp1_11102635View
9Sweet Cherry-RosBREED-1.6K-20191N/A41.41RosBREED_snp_tart_cherry_a_Pp1_11102635View
10Sweet Cherry-AxS-F11N/A57.41RosBREED_snp_tart_cherry_a_Pp1_11102635View
11Sweet Cherry-C-F1-6+9K_array1N/A28.56RosBREED_snp_tart_cherry_a_Pp1_11102635View
12Sweet Cherry-VxC-F1-6+9K_array1N/A54.43RosBREED_snp_tart_cherry_a_Pp1_11102635View
13Sweet Cherry-BTK-Black Tartarian-2013LG01N/A45.5ss490546068View
14Sweet Cherry-RL-Regina-2013LG01N/A41.1ss490546068View
15Sweet Cherry-BTK-F1-2013LG01N/A51.8ss490546068View
16Sweet Cherry-RL-F1-2013LG01N/A41.4ss490546068View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:11102635..11102635. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:11550868..11550868. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:9374727..9374727. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)