RosBREED_snp_tart_cherry_a_Pp2_19629831, RosBREED_snp_tart_cherry_a_Pp2_19629831 (genetic_marker) Prunus cerasus

Marker Overview

Name

RosBREED_snp_tart_cherry_a_Pp2_19629831

dbSNP ID

ss490547320

SNP Array ID

IRSC 6K SNP array for cherry:

RosBREED_snp_tart_cherry_a_Pp2_19629831

Type

SNP

SNP Alleles

A/C

Species

Prunus cerasus

Polymorphism

P_ RosBREED_snp_tart_cherry_a_Pp2_19629831

Publication

[view all]

Libraries


Library Name	Type
IRSC 6K SNP array for cherry	SNP_chip

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a1	2016-11-21

Publications


Year	Publication
2012	Peace C, Bassil N, Main D, Ficklin S, Rosyara UR, Stegmeir T, Sebolt A, Gilmore B, Lawley C, Mockler TC, Bryant DW, Wilhelm L, Iezzoni A. Development and evaluation of a genome-wide 6K SNP array for diploid sweet cherry and tetraploid sour cherry. PloS one. 2012; 7(12):e48305.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Sweet Cherry-RG-F1-2015	G2	N/A	53.14	Rtart_2_19629831	View
2	Prunus-TE-6K cherry SNP-estimate	2	N/A	27.02	RosBREED_snp_tart_cherry_a_Pp2_19629831	View
3	sweet cherry-consensus-map-2012-6K cherry SNP-estimate	2	N/A	37.58	RosBREED_snp_tart_cherry_a_Pp2_19629831	View
4	Sweet Cherry-C-F1	LG2	N/A	49.24	RosBREED_snp_tart_cherry_a_Pp2_19629831	View
5	Sweet Cherry-VxC-F1	LG2	N/A	53.96	RosBREED_snp_tart_cherry_a_Pp2_19629831	View
6	Sweet Cherry-CxC-F2	LG2	N/A	54.3	RosBREED_snp_tart_cherry_a_Pp2_19629831	View
7	Sweet Cherry-RG-F1-2014	G2	N/A	58.7	RosBREED_snp_tart_cherry_a_Pp2_19629831	View
8	Sweet Cherry-RosBREED-3.8K-2020	2	N/A	46.01	RosBREED_snp_tart_cherry_a_Pp2_19629831	View
9	Sweet Cherry-RosBREED-1.6K-2019	2	N/A	45.75	RosBREED_snp_tart_cherry_a_Pp2_19629831	View
10	Sweet Cherry-C-F1-6+9K_array	2	N/A	50.2	RosBREED_snp_tart_cherry_a_Pp2_19629831	View
11	Sweet Cherry-VxC-F1-6+9K_array	2	N/A	51.09	RosBREED_snp_tart_cherry_a_Pp2_19629831	View
12	Sweet_Cherry-Crump-panel-2022	2	N/A	46.01	RosBREED_snp_tart_cherry_a_Pp2_19629831	View
13	Sour Cherry-M172x25-F1	LG2	N/A	45.75	RosBREED_snp_tart_cherry_a_Pp2_19629831	View
14	SourCherry-Montx25-F1	LG2	N/A	45.75	RosBREED_snp_tart_cherry_a_Pp2_19629831	View
15	SourCherry-25x25-F1	LG2	N/A	45.75	RosBREED_snp_tart_cherry_a_Pp2_19629831	View
16	Sour Cherry-US-F1	LG2	N/A	45.75	RosBREED_snp_tart_cherry_a_Pp2_19629831	View
17	SourCherry-RE-F1	LG2	N/A	45.75	RosBREED_snp_tart_cherry_a_Pp2_19629831	View
18	Sweet Cherry-BTK-Kordia-2013	LG02	N/A	46.7	ss490547320	View
19	Sweet Cherry-BTK-F1-2013	LG02	N/A	47.8	ss490547320	View
20	Sweet Cherry-QTL-HotSpot-Chr2-2017	Chr02	N/A	45.8	ss490547320	View

Alignments

Feature Name	Type	Location	Analysis
scaffold_2	supercontig	scaffold_2:19629831..19629831.	Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp02	chromosome	Pp02:23205384..23205384.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr2	chromosome	PAV_r1.0chr2:17125827..17125827.	Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)