RosBREED_snp_tart_cherry_a_Pp4_21145128, RosBREED_snp_tart_cherry_a_Pp4_21145128 (genetic_marker) Prunus cerasus

Marker Overview
NameRosBREED_snp_tart_cherry_a_Pp4_21145128
AliasRosBREED_snp_tart_4_21145128
ss490548855
rs268600947
Rtart_4_21145128
dbSNP IDss490548855
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_tart_cherry_a_Pp4_21145128
TypeSNP
SNP AllelesT/C
SpeciesPrunus cerasus
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rtart_4_21145128Rtart_4_21145128Prunus cerasusmarker_locus
RosBREED_snp_tart_cherry_a_Pp4_21145128RosBREED_snp_tart_cherry_a_Pp4_21145128Prunus cerasusmarker_locus
ss490548855ss490548855Prunus cerasusmarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-02-6Pav-HB-02-6Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-02-6_2Prunus cerasushaplotype
3Pav-HB-02-6_3Prunus cerasushaplotype
4Pav-HB-02-6_4Prunus cerasushaplotype
5Pav-HB-02-6_5Prunus cerasushaplotype
6Pav-HB-02-6_6Prunus cerasushaplotype
7Pav-HB-02-6_7Prunus cerasushaplotype
8Pav-HB-02-6_8Prunus cerasushaplotype
9Pav-HB-02-6_9Prunus cerasushaplotype
10Pav-HB-02-6_10Prunus cerasushaplotype
11Pav-HB-02-6_11Prunus cerasushaplotype
12Pav-HB-02-6_12Prunus cerasushaplotype
13Pav-HB-02-6_13Prunus cerasushaplotype
14Pav-HB-02-6_14Prunus cerasushaplotype
15Pav-HB-02-6_15Prunus cerasushaplotype
16Pav-HB-02-6_16Prunus cerasushaplotype
17Pav-HB-02-6_17Prunus cerasushaplotype
18Pav-HB-02-6_18Prunus cerasushaplotype
19Pav-HB-02-6_19Prunus cerasushaplotype
20Pav-HB-02-6_20Prunus cerasushaplotype
21Pav-HB-02-6_21Prunus cerasushaplotype
22Pav-HB-02-6_22Prunus cerasushaplotype
23Pav-HB-02-6_23Prunus cerasushaplotype
24Pav-HB-02-6_24Prunus cerasushaplotype
25Pav-HB-02-6_25Prunus cerasushaplotype
26Pav-HB-02-6_26Prunus cerasushaplotype
27Pav-HB-02-6_27Prunus cerasushaplotype
28Pav-HB-02-6_28Prunus cerasushaplotype
29Pav-HB-02-6_29Prunus cerasushaplotype
30Pav-HB-02-6_30Prunus cerasushaplotype
31Pav-HB-02-6_31Prunus cerasushaplotype
32Pav-HB-02-6_32Prunus cerasushaplotype
33Pav-HB-02-6_33Prunus cerasushaplotype
34Pav-HB-02-6_34Prunus cerasushaplotype
35Pav-HB-02-6_35Prunus cerasushaplotype
36Pav-HB-02-6_36Prunus cerasushaplotype
37Pav-HB-02-6_37Prunus cerasushaplotype
38Pav-HB-02-6_38Prunus cerasushaplotype
39Pav-HB-02-6_39Prunus cerasushaplotype
40Pav-HB-02-6_40Prunus cerasushaplotype
41Pav-HB-02-6_41Prunus cerasushaplotype
42Pav-HB-02-6_42Prunus cerasushaplotype
43Pav-HB-02-6_43Prunus cerasushaplotype
44Pav-HB-02-6_44Prunus cerasushaplotype
45Pav-HB-02-6_45Prunus cerasushaplotype
46Pav-HB-02-6_46Prunus cerasushaplotype
47Pav-HB-02-6_47Prunus cerasushaplotype
48Pav-HB-02-6_48Prunus cerasushaplotype
49Pav-HB-02-6_49Prunus cerasushaplotype
50Pav-HB-02-6_50Prunus cerasushaplotype
51Pav-HB-02-6_51Prunus cerasushaplotype
52Pav-HB-02-6_52Prunus cerasushaplotype
53Pav-HB-02-6_53Prunus cerasushaplotype
54Pav-HB-02-6_54Prunus cerasushaplotype
55Pav-HB-02-6_55Prunus cerasushaplotype
56Pav-HB-02-6_56Prunus cerasushaplotype
57Pav-HB-02-6_57Prunus cerasushaplotype
58Pav-HB-02-6_58Prunus cerasushaplotype
59Pav-HB-02-6_59Prunus cerasushaplotype
60Pav-HB-02-6_60Prunus cerasushaplotype
61Pav-HB-02-6_61Prunus cerasushaplotype
62Pav-HB-02-6_62Prunus cerasushaplotype
63Pav-HB-02-6_63Prunus cerasushaplotype
64Pav-HB-02-6_64Prunus cerasushaplotype
65Pav-HB-02-6_65Prunus cerasushaplotype
66Pav-HB-02-6_66Prunus cerasushaplotype
67Pav-HB-02-6_67Prunus cerasushaplotype
68Pav-HB-02-6_68Prunus cerasushaplotype
69Pav-HB-02-6_69Prunus cerasushaplotype
70Pav-HB-02-6_70Prunus cerasushaplotype
71Pav-HB-02-6_71Prunus cerasushaplotype
72Pav-HB-02-6_72Prunus cerasushaplotype
73Pav-HB-02-6_73Prunus cerasushaplotype
74Pav-HB-02-6_74Prunus cerasushaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RL-F1-2015L2N/A16.34Rtart_4_21145128View
2Prunus-TE-6K cherry SNP-estimate4N/A51.44RosBREED_snp_tart_cherry_a_Pp4_21145128View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate4N/A50.65RosBREED_snp_tart_cherry_a_Pp4_21145128View
4Sweet Cherry-C-F1LG2N/A12.63RosBREED_snp_tart_cherry_a_Pp4_21145128View
5Sweet Cherry-VxC-F1LG2N/A18.64RosBREED_snp_tart_cherry_a_Pp4_21145128View
6Sweet Cherry-CxC-F2LG2N/A24.84RosBREED_snp_tart_cherry_a_Pp4_21145128View
7Sweet Cherry-BCxBC-F2LG2N/A13.67RosBREED_snp_tart_cherry_a_Pp4_21145128View
8Sweet Cherry-RL-F1-2014L2N/A12RosBREED_snp_tart_cherry_a_Pp4_21145128View
9Sweet Cherry-RosBREED-3.8K-20202N/A9.03RosBREED_snp_tart_cherry_a_Pp4_21145128View
10Sweet Cherry-RosBREED-1.6K-20192N/A8.77RosBREED_snp_tart_cherry_a_Pp4_21145128View
11Sweet Cherry-C-F1-6+9K_array2N/A12.83RosBREED_snp_tart_cherry_a_Pp4_21145128View
12Sweet Cherry-VxC-F1-6+9K_array2N/A17RosBREED_snp_tart_cherry_a_Pp4_21145128View
13Sweet Cherry-BTK-Black Tartarian-2013LG02N/A16.5ss490548855View
14Sweet Cherry-RL-Lapins-2013LG02N/A11.7ss490548855View
15Sweet Cherry-BTK-F1-2013LG02N/A16.4ss490548855View
16Sweet Cherry-RL-F1-2013LG02N/A8.8ss490548855View
17Sweet Cherry-QTL-HotSpot-Chr2-2017Chr02N/A8.8ss490548855View
Alignments
Feature NameTypeLocationAnalysis
scaffold_4 supercontig scaffold_4:21145128..21145128. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp02 chromosome Pp02:11890322..11890322. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr4 chromosome PAV_r1.0chr4:23410719..23410719. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)