RosBREED_snp_tart_cherry_a_Pp1_12169972, RosBREED_snp_tart_cherry_a_Pp1_12169972 (genetic_marker) Prunus cerasus

Marker Overview
NameRosBREED_snp_tart_cherry_a_Pp1_12169972
AliasRosBREED_snp_tart_1_12169972
ss490546096
rs268600251
Rtart_1_12169972
dbSNP IDss490546096
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_tart_cherry_a_Pp1_12169972
TypeSNP
SNP AllelesT/C
SpeciesPrunus cerasus
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rtart_1_12169972Rtart_1_12169972Prunus cerasusmarker_locus
RosBREED_snp_tart_cherry_a_Pp1_12169972RosBREED_snp_tart_cherry_a_Pp1_12169972Prunus cerasusmarker_locus
ss490546096ss490546096Prunus cerasusmarker_locus
RosBREED_snp_tart_cherry_a_Pp1_12169972RosBREED_snp_tart_cherry_a_Pp1_12169972-42.72Prunus cerasusmarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-01-13Pav-HB-01-13Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-01-13_2Prunus cerasushaplotype
3Pav-HB-01-13_3Prunus cerasushaplotype
4Pav-HB-01-13_4Prunus cerasushaplotype
5Pav-HB-01-13_5Prunus cerasushaplotype
6Pav-HB-01-13_6Prunus cerasushaplotype
7Pav-HB-01-13_7Prunus cerasushaplotype
8Pav-HB-01-13_8Prunus cerasushaplotype
9Pav-HB-01-13_9Prunus cerasushaplotype
10Pav-HB-01-13_10Prunus cerasushaplotype
11Pav-HB-01-13_11Prunus cerasushaplotype
12Pav-HB-01-13_12Prunus cerasushaplotype
13Pav-HB-01-13_13Prunus cerasushaplotype
14Pav-HB-01-13_14Prunus cerasushaplotype
15Pav-HB-01-13_15Prunus cerasushaplotype
16Pav-HB-01-13_16Prunus cerasushaplotype
17Pav-HB-01-13_17Prunus cerasushaplotype
18Pav-HB-01-13_18Prunus cerasushaplotype
19Pav-HB-01-13_19Prunus cerasushaplotype
20Pav-HB-01-13_20Prunus cerasushaplotype
21Pav-HB-01-13_21Prunus cerasushaplotype
22Pav-HB-01-13_22Prunus cerasushaplotype
23Pav-HB-01-13_23Prunus cerasushaplotype
24Pav-HB-01-13_24Prunus cerasushaplotype
25Pav-HB-01-13_25Prunus cerasushaplotype
26Pav-HB-01-13_26Prunus cerasushaplotype
27Pav-HB-01-13_27Prunus cerasushaplotype
28Pav-HB-01-13_28Prunus cerasushaplotype
29Pav-HB-01-13_29Prunus cerasushaplotype
30Pav-HB-01-13_30Prunus cerasushaplotype
31Pav-HB-01-13_31Prunus cerasushaplotype
32Pav-HB-01-13_32Prunus cerasushaplotype
33Pav-HB-01-13_33Prunus cerasushaplotype
34Pav-HB-01-13_34Prunus cerasushaplotype
35Pav-HB-01-13_35Prunus cerasushaplotype
36Pav-HB-01-13_36Prunus cerasushaplotype
37Pav-HB-01-13_37Prunus cerasushaplotype
38Pav-HB-01-13_38Prunus cerasushaplotype
39Pav-HB-01-13_39Prunus cerasushaplotype
40Pav-HB-01-13_40Prunus cerasushaplotype
41Pav-HB-01-13_41Prunus cerasushaplotype
42Pav-HB-01-13_42Prunus cerasushaplotype
43Pav-HB-01-13_43Prunus cerasushaplotype
44Pav-HB-01-13_44Prunus cerasushaplotype
45Pav-HB-01-13_45Prunus cerasushaplotype
46Pav-HB-01-13_46Prunus cerasushaplotype
47Pav-HB-01-13_47Prunus cerasushaplotype
48Pav-HB-01-13_48Prunus cerasushaplotype
49Pav-HB-01-13_49Prunus cerasushaplotype
50Pav-HB-01-13_50Prunus cerasushaplotype
51Pav-HB-01-13_51Prunus cerasushaplotype
52Pav-HB-01-13_52Prunus cerasushaplotype
53Pav-HB-01-13_53Prunus cerasushaplotype
54Pav-HB-01-13_54Prunus cerasushaplotype
55Pav-HB-01-13_55Prunus cerasushaplotype
56Pav-HB-01-13_56Prunus cerasushaplotype
57Pav-HB-01-13_57Prunus cerasushaplotype
58Pav-HB-01-13_58Prunus cerasushaplotype
59Pav-HB-01-13_59Prunus cerasushaplotype
60Pav-HB-01-13_60Prunus cerasushaplotype
61Pav-HB-01-13_61Prunus cerasushaplotype
62Pav-HB-01-13_62Prunus cerasushaplotype
63Pav-HB-01-13_63Prunus cerasushaplotype
64Pav-HB-01-13_64Prunus cerasushaplotype
65Pav-HB-01-13_65Prunus cerasushaplotype
66Pav-HB-01-13_66Prunus cerasushaplotype
67Pav-HB-01-13_67Prunus cerasushaplotype
68Pav-HB-01-13_68Prunus cerasushaplotype
69Pav-HB-01-13_69Prunus cerasushaplotype
70Pav-HB-01-13_70Prunus cerasushaplotype
71Pav-HB-01-13_71Prunus cerasushaplotype
72Pav-HB-01-13_72Prunus cerasushaplotype
73Pav-HB-01-13_73Prunus cerasushaplotype
74Pav-HB-01-13_74Prunus cerasushaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015R1N/A30.99Rtart_1_12169972View
2Sweet Cherry-RL-F1-2015R1N/A49.74Rtart_1_12169972View
3Prunus-TE-6K cherry SNP-estimate1N/A21.44RosBREED_snp_tart_cherry_a_Pp1_12169972View
4sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A63.81RosBREED_snp_tart_cherry_a_Pp1_12169972View
5Sweet Cherry-RL-F1-2014R1N/A54.8RosBREED_snp_tart_cherry_a_Pp1_12169972View
6Sweet Cherry-RosBREED-3.8K-20201N/A43.5RosBREED_snp_tart_cherry_a_Pp1_12169972View
7Sweet Cherry-RosBREED-1.6K-20191N/A42.72RosBREED_snp_tart_cherry_a_Pp1_12169972View
8Sweet Cherry-A-F11N/A59.3RosBREED_snp_tart_cherry_a_Pp1_12169972View
9Sweet Cherry-AxS-F11N/A59.13RosBREED_snp_tart_cherry_a_Pp1_12169972View
10Sweet Cherry-RL-Regina-2013LG01N/A50ss490546096View
11Sweet Cherry-RL-F1-2013LG01N/A50.3ss490546096View
12SourCherry-RE-F1LG1N/A42.72RosBREED_snp_tart_cherry_a_Pp1_12169972View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:12169972..12169972. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:12618203..12618203. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:10421305..10421305. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)