RosBREED_snp_tart_cherry_a_Pp3_12115409, RosBREED_snp_tart_cherry_a_Pp3_12115409 (genetic_marker) Prunus cerasus

Marker Overview

Name

RosBREED_snp_tart_cherry_a_Pp3_12115409

dbSNP ID

ss490547960

SNP Array ID

IRSC 6K SNP array for cherry:

RosBREED_snp_tart_cherry_a_Pp3_12115409

Type

SNP

SNP Alleles

A/G

Species

Prunus cerasus

Polymorphism

P_ RosBREED_snp_tart_cherry_a_Pp3_12115409

Libraries


Library Name	Type
IRSC 6K SNP array for cherry	SNP_chip

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a1	2016-11-21

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Prunus-TE-6K cherry SNP-estimate	3	N/A	30.32	RosBREED_snp_tart_cherry_a_Pp3_12115409	View
2	sweet cherry-consensus-map-2012-6K cherry SNP-estimate	3	N/A	48.16	RosBREED_snp_tart_cherry_a_Pp3_12115409	View
3	Sweet Cherry-C-F1	LG3	N/A	44.53	RosBREED_snp_tart_cherry_a_Pp3_12115409	View
4	Sweet Cherry-VxC-F1	LG3	N/A	49.12	RosBREED_snp_tart_cherry_a_Pp3_12115409	View
5	Sweet Cherry-CxC-F2	LG3	N/A	47.86	RosBREED_snp_tart_cherry_a_Pp3_12115409	View
6	Sweet Cherry-BCxBC-F2	LG3	N/A	23.61	RosBREED_snp_tart_cherry_a_Pp3_12115409	View
7	Sweet Cherry-A-F1	3	N/A	60.37	RosBREED_snp_tart_cherry_a_Pp3_12115409	View
8	Sweet Cherry-AxS-F1	3	N/A	60.37	RosBREED_snp_tart_cherry_a_Pp3_12115409	View
9	Sweet Cherry-C-F1-6+9K_array	3	N/A	44.17	RosBREED_snp_tart_cherry_a_Pp3_12115409	View
10	Sweet Cherry-VxC-F1-6+9K_array	3	N/A	51.74	RosBREED_snp_tart_cherry_a_Pp3_12115409	View
11	Sour Cherry-M172x25-F1	LG3	N/A	39.07	RosBREED_snp_tart_cherry_a_Pp3_12115409	View
12	SourCherry-Montx25-F1	LG3	N/A	39.07	RosBREED_snp_tart_cherry_a_Pp3_12115409	View
13	SourCherry-25x25-F1	LG3	N/A	39.07	RosBREED_snp_tart_cherry_a_Pp3_12115409	View
14	Sour Cherry-US-F1	LG3	N/A	39.07	RosBREED_snp_tart_cherry_a_Pp3_12115409	View
15	SourCherry-RE-F1	LG3	N/A	39.07	RosBREED_snp_tart_cherry_a_Pp3_12115409	View
16	Sweet Cherry-BTK-Black Tartarian-2013	LG03	N/A	36	ss490547960	View
17	Sweet Cherry-BTK-F1-2013	LG03	N/A	41.3	ss490547960	View

Sequence

>RosBREED_snp_tart_cherry_a_Pp3_12115409 ID=RosBREED_snp_tart_cherry_a_Pp3_12115409; Name=RosBREED_snp_tart_cherry_a_Pp3_12115409; organism=Prunus cerasus; type=genetic_marker; length=207bp
GTGTCCAATTTCCGCTACATGAAGCTTTAGTCCTCTTACTTCCACATTTC
TGTGTTGTATCTGTTCCATGAGAGCAAGAAAGAGAGACTCTTGAGTGAGA
G[A/G]AGAAAATTAAACAAGAGAGGATGGCAGACAGAATAAGTAAATAG
ATAATGTCAAGAAGTCAAGCGTTTGTTTCTTGTCATTGTTGTCAAGCATT
TGTTTTA

Alignments

Feature Name	Type	Location	Analysis
scaffold_3	supercontig	scaffold_3:12115409..12115409.	Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp03	chromosome	Pp03:17458714..17458714.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr3	chromosome	PAV_r1.0chr3:11465364..11465364.	Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)