RosBREED_snp_tart_cherry_a_Pp4_07070007, RosBREED_snp_tart_cherry_a_Pp4_07070007 (genetic_marker) Prunus cerasus

Marker Overview
NameRosBREED_snp_tart_cherry_a_Pp4_07070007
AliasRosBREED_snp_tart_4_07070007
ss490548587
rs268600880
Rtart_4_07070007
dbSNP IDss490548587
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_tart_cherry_a_Pp4_07070007
TypeSNP
SNP AllelesA/C
SpeciesPrunus cerasus
PolymorphismP_ RosBREED_snp_tart_cherry_a_Pp4_07070007
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rtart_4_07070007Rtart_4_07070007Prunus cerasusmarker_locus
RosBREED_snp_tart_cherry_a_Pp4_07070007RosBREED_snp_tart_cherry_a_Pp4_07070007Prunus cerasusmarker_locus
ss490548587ss490548587Prunus cerasusmarker_locus
RosBREED_snp_tart_cherry_a_Pp4_07070007RosBREED_snp_tart_cherry_a_Pp4_07070007-25.85Prunus cerasusmarker_locus
RosBREED_snp_tart_cherry_a_Pp4_07070007RosBREED_snp_tart_cherry_a_Pp4_07070007-43.489Prunus cerasusmarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-04-8Pav-HB-04-8Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-04-8_2Prunus cerasushaplotype
3Pav-HB-04-8_3Prunus cerasushaplotype
4Pav-HB-04-8_4Prunus cerasushaplotype
5Pav-HB-04-8_5Prunus cerasushaplotype
6Pav-HB-04-8_6Prunus cerasushaplotype
7Pav-HB-04-8_7Prunus cerasushaplotype
8Pav-HB-04-8_8Prunus cerasushaplotype
9Pav-HB-04-8_9Prunus cerasushaplotype
10Pav-HB-04-8_10Prunus cerasushaplotype
11Pav-HB-04-8_11Prunus cerasushaplotype
12Pav-HB-04-8_12Prunus cerasushaplotype
13Pav-HB-04-8_13Prunus cerasushaplotype
14Pav-HB-04-8_14Prunus cerasushaplotype
15Pav-HB-04-8_15Prunus cerasushaplotype
16Pav-HB-04-8_16Prunus cerasushaplotype
17Pav-HB-04-8_17Prunus cerasushaplotype
18Pav-HB-04-8_18Prunus cerasushaplotype
19Pav-HB-04-8_19Prunus cerasushaplotype
20Pav-HB-04-8_20Prunus cerasushaplotype
21Pav-HB-04-8_21Prunus cerasushaplotype
22Pav-HB-04-8_22Prunus cerasushaplotype
23Pav-HB-04-8_23Prunus cerasushaplotype
24Pav-HB-04-8_24Prunus cerasushaplotype
25Pav-HB-04-8_25Prunus cerasushaplotype
26Pav-HB-04-8_26Prunus cerasushaplotype
27Pav-HB-04-8_27Prunus cerasushaplotype
28Pav-HB-04-8_28Prunus cerasushaplotype
29Pav-HB-04-8_29Prunus cerasushaplotype
30Pav-HB-04-8_30Prunus cerasushaplotype
31Pav-HB-04-8_31Prunus cerasushaplotype
32Pav-HB-04-8_32Prunus cerasushaplotype
33Pav-HB-04-8_33Prunus cerasushaplotype
34Pav-HB-04-8_34Prunus cerasushaplotype
35Pav-HB-04-8_35Prunus cerasushaplotype
36Pav-HB-04-8_36Prunus cerasushaplotype
37Pav-HB-04-8_37Prunus cerasushaplotype
38Pav-HB-04-8_38Prunus cerasushaplotype
39Pav-HB-04-8_39Prunus cerasushaplotype
40Pav-HB-04-8_40Prunus cerasushaplotype
41Pav-HB-04-8_41Prunus cerasushaplotype
42Pav-HB-04-8_42Prunus cerasushaplotype
43Pav-HB-04-8_43Prunus cerasushaplotype
44Pav-HB-04-8_44Prunus cerasushaplotype
45Pav-HB-04-8_45Prunus cerasushaplotype
46Pav-HB-04-8_46Prunus cerasushaplotype
47Pav-HB-04-8_47Prunus cerasushaplotype
48Pav-HB-04-8_48Prunus cerasushaplotype
49Pav-HB-04-8_49Prunus cerasushaplotype
50Pav-HB-04-8_50Prunus cerasushaplotype
51Pav-HB-04-8_51Prunus cerasushaplotype
52Pav-HB-04-8_52Prunus cerasushaplotype
53Pav-HB-04-8_53Prunus cerasushaplotype
54Pav-HB-04-8_54Prunus cerasushaplotype
55Pav-HB-04-8_55Prunus cerasushaplotype
56Pav-HB-04-8_56Prunus cerasushaplotype
57Pav-HB-04-8_57Prunus cerasushaplotype
58Pav-HB-04-8_58Prunus cerasushaplotype
59Pav-HB-04-8_59Prunus cerasushaplotype
60Pav-HB-04-8_60Prunus cerasushaplotype
61Pav-HB-04-8_61Prunus cerasushaplotype
62Pav-HB-04-8_62Prunus cerasushaplotype
63Pav-HB-04-8_63Prunus cerasushaplotype
64Pav-HB-04-8_64Prunus cerasushaplotype
65Pav-HB-04-8_65Prunus cerasushaplotype
66Pav-HB-04-8_66Prunus cerasushaplotype
67Pav-HB-04-8_67Prunus cerasushaplotype
68Pav-HB-04-8_68Prunus cerasushaplotype
69Pav-HB-04-8_69Prunus cerasushaplotype
70Pav-HB-04-8_70Prunus cerasushaplotype
71Pav-HB-04-8_71Prunus cerasushaplotype
72Pav-HB-04-8_72Prunus cerasushaplotype
73Pav-HB-04-8_73Prunus cerasushaplotype
74Pav-HB-04-8_74Prunus cerasushaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015R4N/A17Rtart_4_07070007View
2Prunus-TE-6K cherry SNP-estimate4N/A21.44RosBREED_snp_tart_cherry_a_Pp4_07070007View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate4N/A25.02RosBREED_snp_tart_cherry_a_Pp4_07070007View
4Sweet Cherry-VxC-F1LG4N/A34.41RosBREED_snp_tart_cherry_a_Pp4_07070007View
5Sweet Cherry-CxC-F2LG4N/A33.93RosBREED_snp_tart_cherry_a_Pp4_07070007View
6Sweet Cherry-RG-F1-2014R4N/A18.9RosBREED_snp_tart_cherry_a_Pp4_07070007View
7Sweet Cherry-RosBREED-3.8K-20204N/A26.18RosBREED_snp_tart_cherry_a_Pp4_07070007View
8Sweet Cherry-RosBREED-1.6K-20194N/A25.85RosBREED_snp_tart_cherry_a_Pp4_07070007View
9Sweet Cherry-VxC-F1-6+9K_array4N/A34.28RosBREED_snp_tart_cherry_a_Pp4_07070007View
10Sweet Cherry-BTK-Kordia-2013LG04N/A42.2ss490548587View
11Sweet Cherry-BTK-F1-2013LG04N/A42.3ss490548587View
12Sweet Cherry-RL-F1-2013LG04N/A25.9ss490548587View
13Sour Cherry-M172x25-F1LG4N/A25.85RosBREED_snp_tart_cherry_a_Pp4_07070007View
14SourCherry-Montx25-F1LG4N/A25.85RosBREED_snp_tart_cherry_a_Pp4_07070007View
15SourCherry-25x25-F1LG4N/A25.85RosBREED_snp_tart_cherry_a_Pp4_07070007View
16Sour Cherry-US-F1LG4N/A25.85RosBREED_snp_tart_cherry_a_Pp4_07070007View
17SourCherry-RE-F1LG4N/A25.85RosBREED_snp_tart_cherry_a_Pp4_07070007View
18SweetCherry-FX-F1-FercerF4N/A43.49RosBREED_snp_tart_cherry_a_Pp4_07070007View
Alignments
Feature NameTypeLocationAnalysis
scaffold_4 supercontig scaffold_4:7070007..7070007. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp04 chromosome Pp04:7069976..7069976. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr4 chromosome PAV_r1.0chr4:9316320..9316320. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)