RosBREED_snp_tart_cherry_a_Pp1_30413870, RosBREED_snp_tart_cherry_a_Pp1_30413870 (genetic_marker) Prunus cerasus

Marker Overview
NameRosBREED_snp_tart_cherry_a_Pp1_30413870
AliasRosBREED_snp_tart_1_30413870
ss490546447
rs268600338
Rtart_1_30413870
dbSNP IDss490546447
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_tart_cherry_a_Pp1_30413870
TypeSNP
SNP AllelesA/G
SpeciesPrunus cerasus
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rtart_1_30413870Rtart_1_30413870Prunus cerasusmarker_locus
RosBREED_snp_tart_cherry_a_Pp1_30413870RosBREED_snp_tart_cherry_a_Pp1_30413870Prunus cerasusmarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-01-24Pav-HB-01-24Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-01-24_2Prunus cerasushaplotype
3Pav-HB-01-24_3Prunus cerasushaplotype
4Pav-HB-01-24_4Prunus cerasushaplotype
5Pav-HB-01-24_5Prunus cerasushaplotype
6Pav-HB-01-24_6Prunus cerasushaplotype
7Pav-HB-01-24_7Prunus cerasushaplotype
8Pav-HB-01-24_8Prunus cerasushaplotype
9Pav-HB-01-24_9Prunus cerasushaplotype
10Pav-HB-01-24_10Prunus cerasushaplotype
11Pav-HB-01-24_11Prunus cerasushaplotype
12Pav-HB-01-24_12Prunus cerasushaplotype
13Pav-HB-01-24_13Prunus cerasushaplotype
14Pav-HB-01-24_14Prunus cerasushaplotype
15Pav-HB-01-24_15Prunus cerasushaplotype
16Pav-HB-01-24_16Prunus cerasushaplotype
17Pav-HB-01-24_17Prunus cerasushaplotype
18Pav-HB-01-24_18Prunus cerasushaplotype
19Pav-HB-01-24_19Prunus cerasushaplotype
20Pav-HB-01-24_20Prunus cerasushaplotype
21Pav-HB-01-24_21Prunus cerasushaplotype
22Pav-HB-01-24_22Prunus cerasushaplotype
23Pav-HB-01-24_23Prunus cerasushaplotype
24Pav-HB-01-24_24Prunus cerasushaplotype
25Pav-HB-01-24_25Prunus cerasushaplotype
26Pav-HB-01-24_26Prunus cerasushaplotype
27Pav-HB-01-24_27Prunus cerasushaplotype
28Pav-HB-01-24_28Prunus cerasushaplotype
29Pav-HB-01-24_29Prunus cerasushaplotype
30Pav-HB-01-24_30Prunus cerasushaplotype
31Pav-HB-01-24_31Prunus cerasushaplotype
32Pav-HB-01-24_32Prunus cerasushaplotype
33Pav-HB-01-24_33Prunus cerasushaplotype
34Pav-HB-01-24_34Prunus cerasushaplotype
35Pav-HB-01-24_35Prunus cerasushaplotype
36Pav-HB-01-24_36Prunus cerasushaplotype
37Pav-HB-01-24_37Prunus cerasushaplotype
38Pav-HB-01-24_38Prunus cerasushaplotype
39Pav-HB-01-24_39Prunus cerasushaplotype
40Pav-HB-01-24_40Prunus cerasushaplotype
41Pav-HB-01-24_41Prunus cerasushaplotype
42Pav-HB-01-24_42Prunus cerasushaplotype
43Pav-HB-01-24_43Prunus cerasushaplotype
44Pav-HB-01-24_44Prunus cerasushaplotype
45Pav-HB-01-24_45Prunus cerasushaplotype
46Pav-HB-01-24_46Prunus cerasushaplotype
47Pav-HB-01-24_47Prunus cerasushaplotype
48Pav-HB-01-24_48Prunus cerasushaplotype
49Pav-HB-01-24_49Prunus cerasushaplotype
50Pav-HB-01-24_50Prunus cerasushaplotype
51Pav-HB-01-24_51Prunus cerasushaplotype
52Pav-HB-01-24_52Prunus cerasushaplotype
53Pav-HB-01-24_53Prunus cerasushaplotype
54Pav-HB-01-24_54Prunus cerasushaplotype
55Pav-HB-01-24_55Prunus cerasushaplotype
56Pav-HB-01-24_56Prunus cerasushaplotype
57Pav-HB-01-24_57Prunus cerasushaplotype
58Pav-HB-01-24_58Prunus cerasushaplotype
59Pav-HB-01-24_59Prunus cerasushaplotype
60Pav-HB-01-24_60Prunus cerasushaplotype
61Pav-HB-01-24_61Prunus cerasushaplotype
62Pav-HB-01-24_62Prunus cerasushaplotype
63Pav-HB-01-24_63Prunus cerasushaplotype
64Pav-HB-01-24_64Prunus cerasushaplotype
65Pav-HB-01-24_65Prunus cerasushaplotype
66Pav-HB-01-24_66Prunus cerasushaplotype
67Pav-HB-01-24_67Prunus cerasushaplotype
68Pav-HB-01-24_68Prunus cerasushaplotype
69Pav-HB-01-24_69Prunus cerasushaplotype
70Pav-HB-01-24_70Prunus cerasushaplotype
71Pav-HB-01-24_71Prunus cerasushaplotype
72Pav-HB-01-24_72Prunus cerasushaplotype
73Pav-HB-01-24_73Prunus cerasushaplotype
74Pav-HB-01-24_74Prunus cerasushaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015G1N/A78.43Rtart_1_30413870View
2Prunus-TE-6K cherry SNP-estimate1N/A40.6RosBREED_snp_tart_cherry_a_Pp1_30413870View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A102.54RosBREED_snp_tart_cherry_a_Pp1_30413870View
4Sweet Cherry-V-F1LG1N/A89.64RosBREED_snp_tart_cherry_a_Pp1_30413870View
5Sweet Cherry-VxC-F1LG1N/A88.07RosBREED_snp_tart_cherry_a_Pp1_30413870View
6Sweet Cherry-RG-F1-2014G1N/A90.1RosBREED_snp_tart_cherry_a_Pp1_30413870View
7Sweet Cherry-V-F1-6+9K_array1N/A81.03RosBREED_snp_tart_cherry_a_Pp1_30413870View
8Sweet Cherry-RosBREED-3.8K-20201N/A88.28RosBREED_snp_tart_cherry_a_Pp1_30413870View
9Sweet Cherry-RosBREED-1.6K-20191N/A87.5RosBREED_snp_tart_cherry_a_Pp1_30413870View
10Sweet Cherry-S-F11N/A66.21RosBREED_snp_tart_cherry_a_Pp1_30413870View
11Sweet Cherry-AxS-F11N/A119.29RosBREED_snp_tart_cherry_a_Pp1_30413870View
12Sweet Cherry-VxC-F1-6+9K_array1N/A111.64RosBREED_snp_tart_cherry_a_Pp1_30413870View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:30413870..30413870. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:31387817..31387817. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:25857673..25857673. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)