RosBREED_snp_tart_cherry_a_Pp1_15967014, RosBREED_snp_tart_cherry_a_Pp1_15967014 (genetic_marker) Prunus cerasus

Marker Overview
NameRosBREED_snp_tart_cherry_a_Pp1_15967014
AliasRosBREED_snp_tart_1_15967014
ss490546137
rs268600261
Rtart_1_15967014
dbSNP IDss490546137
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_tart_cherry_a_Pp1_15967014
TypeSNP
SNP AllelesT/C
SpeciesPrunus cerasus
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rtart_1_15967014Rtart_1_15967014Prunus cerasusmarker_locus
RosBREED_snp_tart_cherry_a_Pp1_15967014RosBREED_snp_tart_cherry_a_Pp1_15967014Prunus cerasusmarker_locus
ss490546137ss490546137Prunus cerasusmarker_locus
RosBREED_snp_tart_cherry_a_Pp1_15967014RosBREED_snp_tart_cherry_a_Pp1_15967014-45.92Prunus cerasusmarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-01-15Pav-HB-01-15Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-01-15_2Prunus cerasushaplotype
3Pav-HB-01-15_3Prunus cerasushaplotype
4Pav-HB-01-15_4Prunus cerasushaplotype
5Pav-HB-01-15_5Prunus cerasushaplotype
6Pav-HB-01-15_6Prunus cerasushaplotype
7Pav-HB-01-15_7Prunus cerasushaplotype
8Pav-HB-01-15_8Prunus cerasushaplotype
9Pav-HB-01-15_9Prunus cerasushaplotype
10Pav-HB-01-15_10Prunus cerasushaplotype
11Pav-HB-01-15_11Prunus cerasushaplotype
12Pav-HB-01-15_12Prunus cerasushaplotype
13Pav-HB-01-15_13Prunus cerasushaplotype
14Pav-HB-01-15_14Prunus cerasushaplotype
15Pav-HB-01-15_15Prunus cerasushaplotype
16Pav-HB-01-15_16Prunus cerasushaplotype
17Pav-HB-01-15_17Prunus cerasushaplotype
18Pav-HB-01-15_18Prunus cerasushaplotype
19Pav-HB-01-15_19Prunus cerasushaplotype
20Pav-HB-01-15_20Prunus cerasushaplotype
21Pav-HB-01-15_21Prunus cerasushaplotype
22Pav-HB-01-15_22Prunus cerasushaplotype
23Pav-HB-01-15_23Prunus cerasushaplotype
24Pav-HB-01-15_24Prunus cerasushaplotype
25Pav-HB-01-15_25Prunus cerasushaplotype
26Pav-HB-01-15_26Prunus cerasushaplotype
27Pav-HB-01-15_27Prunus cerasushaplotype
28Pav-HB-01-15_28Prunus cerasushaplotype
29Pav-HB-01-15_29Prunus cerasushaplotype
30Pav-HB-01-15_30Prunus cerasushaplotype
31Pav-HB-01-15_31Prunus cerasushaplotype
32Pav-HB-01-15_32Prunus cerasushaplotype
33Pav-HB-01-15_33Prunus cerasushaplotype
34Pav-HB-01-15_34Prunus cerasushaplotype
35Pav-HB-01-15_35Prunus cerasushaplotype
36Pav-HB-01-15_36Prunus cerasushaplotype
37Pav-HB-01-15_37Prunus cerasushaplotype
38Pav-HB-01-15_38Prunus cerasushaplotype
39Pav-HB-01-15_39Prunus cerasushaplotype
40Pav-HB-01-15_40Prunus cerasushaplotype
41Pav-HB-01-15_41Prunus cerasushaplotype
42Pav-HB-01-15_42Prunus cerasushaplotype
43Pav-HB-01-15_43Prunus cerasushaplotype
44Pav-HB-01-15_44Prunus cerasushaplotype
45Pav-HB-01-15_45Prunus cerasushaplotype
46Pav-HB-01-15_46Prunus cerasushaplotype
47Pav-HB-01-15_47Prunus cerasushaplotype
48Pav-HB-01-15_48Prunus cerasushaplotype
49Pav-HB-01-15_49Prunus cerasushaplotype
50Pav-HB-01-15_50Prunus cerasushaplotype
51Pav-HB-01-15_51Prunus cerasushaplotype
52Pav-HB-01-15_52Prunus cerasushaplotype
53Pav-HB-01-15_53Prunus cerasushaplotype
54Pav-HB-01-15_54Prunus cerasushaplotype
55Pav-HB-01-15_55Prunus cerasushaplotype
56Pav-HB-01-15_56Prunus cerasushaplotype
57Pav-HB-01-15_57Prunus cerasushaplotype
58Pav-HB-01-15_58Prunus cerasushaplotype
59Pav-HB-01-15_59Prunus cerasushaplotype
60Pav-HB-01-15_60Prunus cerasushaplotype
61Pav-HB-01-15_61Prunus cerasushaplotype
62Pav-HB-01-15_62Prunus cerasushaplotype
63Pav-HB-01-15_63Prunus cerasushaplotype
64Pav-HB-01-15_64Prunus cerasushaplotype
65Pav-HB-01-15_65Prunus cerasushaplotype
66Pav-HB-01-15_66Prunus cerasushaplotype
67Pav-HB-01-15_67Prunus cerasushaplotype
68Pav-HB-01-15_68Prunus cerasushaplotype
69Pav-HB-01-15_69Prunus cerasushaplotype
70Pav-HB-01-15_70Prunus cerasushaplotype
71Pav-HB-01-15_71Prunus cerasushaplotype
72Pav-HB-01-15_72Prunus cerasushaplotype
73Pav-HB-01-15_73Prunus cerasushaplotype
74Pav-HB-01-15_74Prunus cerasushaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015R1N/A37.24Rtart_1_15967014View
2Sweet Cherry-RL-F1-2015R1N/A55.96Rtart_1_15967014View
3Prunus-TE-6K cherry SNP-estimate1N/A26.18RosBREED_snp_tart_cherry_a_Pp1_15967014View
4sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A70.77RosBREED_snp_tart_cherry_a_Pp1_15967014View
5Sweet Cherry-BCxBC-F2LG1N/A45.91RosBREED_snp_tart_cherry_a_Pp1_15967014View
6Sweet Cherry-RG-F1-2014R1N/A42.7RosBREED_snp_tart_cherry_a_Pp1_15967014View
7Sweet Cherry-RosBREED-3.8K-20201N/A46.7RosBREED_snp_tart_cherry_a_Pp1_15967014View
8Sweet Cherry-RosBREED-1.6K-20191N/A45.92RosBREED_snp_tart_cherry_a_Pp1_15967014View
9Sweet Cherry-RL-Regina-2013LG01N/A56.2ss490546137View
10Sweet Cherry-RL-F1-2013LG01N/A56.4ss490546137View
11Sour Cherry-M172x25-F1LG1N/A45.92RosBREED_snp_tart_cherry_a_Pp1_15967014View
12SourCherry-Montx25-F1LG1N/A45.92RosBREED_snp_tart_cherry_a_Pp1_15967014View
13SourCherry-25x25-F1LG1N/A45.92RosBREED_snp_tart_cherry_a_Pp1_15967014View
14Sour Cherry-US-F1LG1N/A45.92RosBREED_snp_tart_cherry_a_Pp1_15967014View
15SourCherry-RE-F1LG1N/A45.92RosBREED_snp_tart_cherry_a_Pp1_15967014View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:15967014..15967014. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:16941316..16941316. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)