RosBREED_snp_tart_cherry_a_Pp3_04138750, RosBREED_snp_tart_cherry_a_Pp3_04138750 (genetic_marker) Prunus cerasus

Marker Overview
NameRosBREED_snp_tart_cherry_a_Pp3_04138750
AliasRosBREED_snp_tart_3_04138750
ss490547825
rs268600688
Rtart_3_04138750
dbSNP IDss490547825
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_tart_cherry_a_Pp3_04138750
TypeSNP
SNP AllelesA/G
SpeciesPrunus cerasus
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rtart_3_04138750Rtart_3_04138750Prunus cerasusmarker_locus
RosBREED_snp_tart_cherry_a_Pp3_04138750RosBREED_snp_tart_cherry_a_Pp3_04138750Prunus cerasusmarker_locus
ss490547825ss490547825Prunus cerasusmarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-03-8Pav-HB-03-8Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-03-8_2Prunus cerasushaplotype
3Pav-HB-03-8_3Prunus cerasushaplotype
4Pav-HB-03-8_4Prunus cerasushaplotype
5Pav-HB-03-8_5Prunus cerasushaplotype
6Pav-HB-03-8_6Prunus cerasushaplotype
7Pav-HB-03-8_7Prunus cerasushaplotype
8Pav-HB-03-8_8Prunus cerasushaplotype
9Pav-HB-03-8_9Prunus cerasushaplotype
10Pav-HB-03-8_10Prunus cerasushaplotype
11Pav-HB-03-8_11Prunus cerasushaplotype
12Pav-HB-03-8_12Prunus cerasushaplotype
13Pav-HB-03-8_13Prunus cerasushaplotype
14Pav-HB-03-8_14Prunus cerasushaplotype
15Pav-HB-03-8_15Prunus cerasushaplotype
16Pav-HB-03-8_16Prunus cerasushaplotype
17Pav-HB-03-8_17Prunus cerasushaplotype
18Pav-HB-03-8_18Prunus cerasushaplotype
19Pav-HB-03-8_19Prunus cerasushaplotype
20Pav-HB-03-8_20Prunus cerasushaplotype
21Pav-HB-03-8_21Prunus cerasushaplotype
22Pav-HB-03-8_22Prunus cerasushaplotype
23Pav-HB-03-8_23Prunus cerasushaplotype
24Pav-HB-03-8_24Prunus cerasushaplotype
25Pav-HB-03-8_25Prunus cerasushaplotype
26Pav-HB-03-8_26Prunus cerasushaplotype
27Pav-HB-03-8_27Prunus cerasushaplotype
28Pav-HB-03-8_28Prunus cerasushaplotype
29Pav-HB-03-8_29Prunus cerasushaplotype
30Pav-HB-03-8_30Prunus cerasushaplotype
31Pav-HB-03-8_31Prunus cerasushaplotype
32Pav-HB-03-8_32Prunus cerasushaplotype
33Pav-HB-03-8_33Prunus cerasushaplotype
34Pav-HB-03-8_34Prunus cerasushaplotype
35Pav-HB-03-8_35Prunus cerasushaplotype
36Pav-HB-03-8_36Prunus cerasushaplotype
37Pav-HB-03-8_37Prunus cerasushaplotype
38Pav-HB-03-8_38Prunus cerasushaplotype
39Pav-HB-03-8_39Prunus cerasushaplotype
40Pav-HB-03-8_40Prunus cerasushaplotype
41Pav-HB-03-8_41Prunus cerasushaplotype
42Pav-HB-03-8_42Prunus cerasushaplotype
43Pav-HB-03-8_43Prunus cerasushaplotype
44Pav-HB-03-8_44Prunus cerasushaplotype
45Pav-HB-03-8_45Prunus cerasushaplotype
46Pav-HB-03-8_46Prunus cerasushaplotype
47Pav-HB-03-8_47Prunus cerasushaplotype
48Pav-HB-03-8_48Prunus cerasushaplotype
49Pav-HB-03-8_49Prunus cerasushaplotype
50Pav-HB-03-8_50Prunus cerasushaplotype
51Pav-HB-03-8_51Prunus cerasushaplotype
52Pav-HB-03-8_52Prunus cerasushaplotype
53Pav-HB-03-8_53Prunus cerasushaplotype
54Pav-HB-03-8_54Prunus cerasushaplotype
55Pav-HB-03-8_55Prunus cerasushaplotype
56Pav-HB-03-8_56Prunus cerasushaplotype
57Pav-HB-03-8_57Prunus cerasushaplotype
58Pav-HB-03-8_58Prunus cerasushaplotype
59Pav-HB-03-8_59Prunus cerasushaplotype
60Pav-HB-03-8_60Prunus cerasushaplotype
61Pav-HB-03-8_61Prunus cerasushaplotype
62Pav-HB-03-8_62Prunus cerasushaplotype
63Pav-HB-03-8_63Prunus cerasushaplotype
64Pav-HB-03-8_64Prunus cerasushaplotype
65Pav-HB-03-8_65Prunus cerasushaplotype
66Pav-HB-03-8_66Prunus cerasushaplotype
67Pav-HB-03-8_67Prunus cerasushaplotype
68Pav-HB-03-8_68Prunus cerasushaplotype
69Pav-HB-03-8_69Prunus cerasushaplotype
70Pav-HB-03-8_70Prunus cerasushaplotype
71Pav-HB-03-8_71Prunus cerasushaplotype
72Pav-HB-03-8_72Prunus cerasushaplotype
73Pav-HB-03-8_73Prunus cerasushaplotype
74Pav-HB-03-8_74Prunus cerasushaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015G3N/A22.35Rtart_3_04138750View
2Prunus-TE-6K cherry SNP-estimate3N/A14.02RosBREED_snp_tart_cherry_a_Pp3_04138750View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate3N/A26.86RosBREED_snp_tart_cherry_a_Pp3_04138750View
4Sweet Cherry-RG-F1-2014G3N/A22.2RosBREED_snp_tart_cherry_a_Pp3_04138750View
5Sweet Cherry-RosBREED-3.8K-20203N/A25.01RosBREED_snp_tart_cherry_a_Pp3_04138750View
6Sweet Cherry-RosBREED-1.6K-20193N/A23.02RosBREED_snp_tart_cherry_a_Pp3_04138750View
7Sweet Cherry-A-F13N/A34.71RosBREED_snp_tart_cherry_a_Pp3_04138750View
8Sweet Cherry-AxS-F13N/A34.71RosBREED_snp_tart_cherry_a_Pp3_04138750View
9Sweet Cherry-BTK-Black Tartarian-2013LG03N/A21.5ss490547825View
10Sweet Cherry-BTK-F1-2013LG03N/A26.7ss490547825View
Alignments
Feature NameTypeLocationAnalysis
scaffold_3 supercontig scaffold_3:4138750..4138750. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp03 chromosome Pp03:4999634..4999634. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr3 chromosome PAV_r1.0chr3:4645451..4645451. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)