RosBREED_snp_tart_cherry_a_Pp1_38376904, RosBREED_snp_tart_cherry_a_Pp1_38376904 (genetic_marker) Prunus cerasus

Marker Overview
NameRosBREED_snp_tart_cherry_a_Pp1_38376904
AliasRosBREED_snp_tart_1_38376904
ss490546794
rs268600424
Rtart_1_38376904
dbSNP IDss490546794
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_tart_cherry_a_Pp1_38376904
TypeSNP
SNP AllelesT/C
SpeciesPrunus cerasus
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rtart_1_38376904Rtart_1_38376904Prunus cerasusmarker_locus
RosBREED_snp_tart_cherry_a_Pp1_38376904RosBREED_snp_tart_cherry_a_Pp1_38376904Prunus cerasusmarker_locus
ss490546794ss490546794Prunus cerasusmarker_locus
RosBREED_snp_tart_cherry_a_Pp1_38376904RosBREED_snp_tart_cherry_a_Pp1_38376904-119.79Prunus cerasusmarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-01-37Pav-HB-01-37Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-01-37_2Prunus cerasushaplotype
3Pav-HB-01-37_3Prunus cerasushaplotype
4Pav-HB-01-37_4Prunus cerasushaplotype
5Pav-HB-01-37_5Prunus cerasushaplotype
6Pav-HB-01-37_6Prunus cerasushaplotype
7Pav-HB-01-37_7Prunus cerasushaplotype
8Pav-HB-01-37_8Prunus cerasushaplotype
9Pav-HB-01-37_9Prunus cerasushaplotype
10Pav-HB-01-37_10Prunus cerasushaplotype
11Pav-HB-01-37_11Prunus cerasushaplotype
12Pav-HB-01-37_12Prunus cerasushaplotype
13Pav-HB-01-37_13Prunus cerasushaplotype
14Pav-HB-01-37_14Prunus cerasushaplotype
15Pav-HB-01-37_15Prunus cerasushaplotype
16Pav-HB-01-37_16Prunus cerasushaplotype
17Pav-HB-01-37_17Prunus cerasushaplotype
18Pav-HB-01-37_18Prunus cerasushaplotype
19Pav-HB-01-37_19Prunus cerasushaplotype
20Pav-HB-01-37_20Prunus cerasushaplotype
21Pav-HB-01-37_21Prunus cerasushaplotype
22Pav-HB-01-37_22Prunus cerasushaplotype
23Pav-HB-01-37_23Prunus cerasushaplotype
24Pav-HB-01-37_24Prunus cerasushaplotype
25Pav-HB-01-37_25Prunus cerasushaplotype
26Pav-HB-01-37_26Prunus cerasushaplotype
27Pav-HB-01-37_27Prunus cerasushaplotype
28Pav-HB-01-37_28Prunus cerasushaplotype
29Pav-HB-01-37_29Prunus cerasushaplotype
30Pav-HB-01-37_30Prunus cerasushaplotype
31Pav-HB-01-37_31Prunus cerasushaplotype
32Pav-HB-01-37_32Prunus cerasushaplotype
33Pav-HB-01-37_33Prunus cerasushaplotype
34Pav-HB-01-37_34Prunus cerasushaplotype
35Pav-HB-01-37_35Prunus cerasushaplotype
36Pav-HB-01-37_36Prunus cerasushaplotype
37Pav-HB-01-37_37Prunus cerasushaplotype
38Pav-HB-01-37_38Prunus cerasushaplotype
39Pav-HB-01-37_39Prunus cerasushaplotype
40Pav-HB-01-37_40Prunus cerasushaplotype
41Pav-HB-01-37_41Prunus cerasushaplotype
42Pav-HB-01-37_42Prunus cerasushaplotype
43Pav-HB-01-37_43Prunus cerasushaplotype
44Pav-HB-01-37_44Prunus cerasushaplotype
45Pav-HB-01-37_45Prunus cerasushaplotype
46Pav-HB-01-37_46Prunus cerasushaplotype
47Pav-HB-01-37_47Prunus cerasushaplotype
48Pav-HB-01-37_48Prunus cerasushaplotype
49Pav-HB-01-37_49Prunus cerasushaplotype
50Pav-HB-01-37_50Prunus cerasushaplotype
51Pav-HB-01-37_51Prunus cerasushaplotype
52Pav-HB-01-37_52Prunus cerasushaplotype
53Pav-HB-01-37_53Prunus cerasushaplotype
54Pav-HB-01-37_54Prunus cerasushaplotype
55Pav-HB-01-37_55Prunus cerasushaplotype
56Pav-HB-01-37_56Prunus cerasushaplotype
57Pav-HB-01-37_57Prunus cerasushaplotype
58Pav-HB-01-37_58Prunus cerasushaplotype
59Pav-HB-01-37_59Prunus cerasushaplotype
60Pav-HB-01-37_60Prunus cerasushaplotype
61Pav-HB-01-37_61Prunus cerasushaplotype
62Pav-HB-01-37_62Prunus cerasushaplotype
63Pav-HB-01-37_63Prunus cerasushaplotype
64Pav-HB-01-37_64Prunus cerasushaplotype
65Pav-HB-01-37_65Prunus cerasushaplotype
66Pav-HB-01-37_66Prunus cerasushaplotype
67Pav-HB-01-37_67Prunus cerasushaplotype
68Pav-HB-01-37_68Prunus cerasushaplotype
69Pav-HB-01-37_69Prunus cerasushaplotype
70Pav-HB-01-37_70Prunus cerasushaplotype
71Pav-HB-01-37_71Prunus cerasushaplotype
72Pav-HB-01-37_72Prunus cerasushaplotype
73Pav-HB-01-37_73Prunus cerasushaplotype
74Pav-HB-01-37_74Prunus cerasushaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015G1N/A111.31Rtart_1_38376904View
2Sweet Cherry-RL-F1-2015L1N/A110.76Rtart_1_38376904View
3Prunus-TE-6K cherry SNP-estimate1N/A60.4RosBREED_snp_tart_cherry_a_Pp1_38376904View
4sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A151.09RosBREED_snp_tart_cherry_a_Pp1_38376904View
5Sweet Cherry-RL-F1-2014L1N/A129.3RosBREED_snp_tart_cherry_a_Pp1_38376904View
6Sweet Cherry-RG-F1-2014G1N/A125.2RosBREED_snp_tart_cherry_a_Pp1_38376904View
7Sweet Cherry-RosBREED-3.8K-20201N/A120.57RosBREED_snp_tart_cherry_a_Pp1_38376904View
8Sweet Cherry-RosBREED-1.6K-20191N/A119.79RosBREED_snp_tart_cherry_a_Pp1_38376904View
9Sweet Cherry-S-F11N/A92.01RosBREED_snp_tart_cherry_a_Pp1_38376904View
10Sweet Cherry-AxS-F11N/A153.58RosBREED_snp_tart_cherry_a_Pp1_38376904View
11Sweet Cherry-BTK-Kordia-2013LG01N/A156.2ss490546794View
12Sweet Cherry-RL-Lapins-2013LG01N/A114.5ss490546794View
13Sweet Cherry-BTK-F1-2013LG01N/A126.1ss490546794View
14SourCherry-Montx25-F1LG1N/A119.79RosBREED_snp_tart_cherry_a_Pp1_38376904View
15SourCherry-25x25-F1LG1N/A119.79RosBREED_snp_tart_cherry_a_Pp1_38376904View
16Sour Cherry-US-F1LG1N/A119.79RosBREED_snp_tart_cherry_a_Pp1_38376904View
17SourCherry-RE-F1LG1N/A119.79RosBREED_snp_tart_cherry_a_Pp1_38376904View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:38376904..38376904. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:39350272..39350272. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:34634868..34634868. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)