RosBREED_snp_tart_cherry_a_Pp2_23794909, RosBREED_snp_tart_cherry_a_Pp2_23794909 (genetic_marker) Prunus cerasus

Marker Overview
NameRosBREED_snp_tart_cherry_a_Pp2_23794909
AliasRosBREED_snp_tart_2_23794909
ss490547536
rs268600615
Rtart_2_23794909
dbSNP IDss490547536
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_tart_cherry_a_Pp2_23794909
TypeSNP
SNP AllelesT/G
SpeciesPrunus cerasus
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rtart_2_23794909Rtart_2_23794909Prunus cerasusmarker_locus
RosBREED_snp_tart_cherry_a_Pp2_23794909RosBREED_snp_tart_cherry_a_Pp2_23794909Prunus cerasusmarker_locus
ss490547536ss490547536Prunus cerasusmarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-02-20Pav-HB-02-20Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-02-20_2Prunus cerasushaplotype
3Pav-HB-02-20_3Prunus cerasushaplotype
4Pav-HB-02-20_4Prunus cerasushaplotype
5Pav-HB-02-20_5Prunus cerasushaplotype
6Pav-HB-02-20_6Prunus cerasushaplotype
7Pav-HB-02-20_7Prunus cerasushaplotype
8Pav-HB-02-20_8Prunus cerasushaplotype
9Pav-HB-02-20_9Prunus cerasushaplotype
10Pav-HB-02-20_10Prunus cerasushaplotype
11Pav-HB-02-20_11Prunus cerasushaplotype
12Pav-HB-02-20_12Prunus cerasushaplotype
13Pav-HB-02-20_13Prunus cerasushaplotype
14Pav-HB-02-20_14Prunus cerasushaplotype
15Pav-HB-02-20_15Prunus cerasushaplotype
16Pav-HB-02-20_16Prunus cerasushaplotype
17Pav-HB-02-20_17Prunus cerasushaplotype
18Pav-HB-02-20_18Prunus cerasushaplotype
19Pav-HB-02-20_19Prunus cerasushaplotype
20Pav-HB-02-20_20Prunus cerasushaplotype
21Pav-HB-02-20_21Prunus cerasushaplotype
22Pav-HB-02-20_22Prunus cerasushaplotype
23Pav-HB-02-20_23Prunus cerasushaplotype
24Pav-HB-02-20_24Prunus cerasushaplotype
25Pav-HB-02-20_25Prunus cerasushaplotype
26Pav-HB-02-20_26Prunus cerasushaplotype
27Pav-HB-02-20_27Prunus cerasushaplotype
28Pav-HB-02-20_28Prunus cerasushaplotype
29Pav-HB-02-20_29Prunus cerasushaplotype
30Pav-HB-02-20_30Prunus cerasushaplotype
31Pav-HB-02-20_31Prunus cerasushaplotype
32Pav-HB-02-20_32Prunus cerasushaplotype
33Pav-HB-02-20_33Prunus cerasushaplotype
34Pav-HB-02-20_34Prunus cerasushaplotype
35Pav-HB-02-20_35Prunus cerasushaplotype
36Pav-HB-02-20_36Prunus cerasushaplotype
37Pav-HB-02-20_37Prunus cerasushaplotype
38Pav-HB-02-20_38Prunus cerasushaplotype
39Pav-HB-02-20_39Prunus cerasushaplotype
40Pav-HB-02-20_40Prunus cerasushaplotype
41Pav-HB-02-20_41Prunus cerasushaplotype
42Pav-HB-02-20_42Prunus cerasushaplotype
43Pav-HB-02-20_43Prunus cerasushaplotype
44Pav-HB-02-20_44Prunus cerasushaplotype
45Pav-HB-02-20_45Prunus cerasushaplotype
46Pav-HB-02-20_46Prunus cerasushaplotype
47Pav-HB-02-20_47Prunus cerasushaplotype
48Pav-HB-02-20_48Prunus cerasushaplotype
49Pav-HB-02-20_49Prunus cerasushaplotype
50Pav-HB-02-20_50Prunus cerasushaplotype
51Pav-HB-02-20_51Prunus cerasushaplotype
52Pav-HB-02-20_52Prunus cerasushaplotype
53Pav-HB-02-20_53Prunus cerasushaplotype
54Pav-HB-02-20_54Prunus cerasushaplotype
55Pav-HB-02-20_55Prunus cerasushaplotype
56Pav-HB-02-20_56Prunus cerasushaplotype
57Pav-HB-02-20_57Prunus cerasushaplotype
58Pav-HB-02-20_58Prunus cerasushaplotype
59Pav-HB-02-20_59Prunus cerasushaplotype
60Pav-HB-02-20_60Prunus cerasushaplotype
61Pav-HB-02-20_61Prunus cerasushaplotype
62Pav-HB-02-20_62Prunus cerasushaplotype
63Pav-HB-02-20_63Prunus cerasushaplotype
64Pav-HB-02-20_64Prunus cerasushaplotype
65Pav-HB-02-20_65Prunus cerasushaplotype
66Pav-HB-02-20_66Prunus cerasushaplotype
67Pav-HB-02-20_67Prunus cerasushaplotype
68Pav-HB-02-20_68Prunus cerasushaplotype
69Pav-HB-02-20_69Prunus cerasushaplotype
70Pav-HB-02-20_70Prunus cerasushaplotype
71Pav-HB-02-20_71Prunus cerasushaplotype
72Pav-HB-02-20_72Prunus cerasushaplotype
73Pav-HB-02-20_73Prunus cerasushaplotype
74Pav-HB-02-20_74Prunus cerasushaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015R2N/A64.59Rtart_2_23794909View
2Sweet Cherry-RL-F1-2015R2N/A75.8Rtart_2_23794909View
3Prunus-TE-6K cherry SNP-estimate2N/A39.56RosBREED_snp_tart_cherry_a_Pp2_23794909View
4sweet cherry-consensus-map-2012-6K cherry SNP-estimate2N/A64.37RosBREED_snp_tart_cherry_a_Pp2_23794909View
5Sweet Cherry-RL-F1-2014R2N/A78.6RosBREED_snp_tart_cherry_a_Pp2_23794909View
6Sweet Cherry-RG-F1-2014R2N/A70.6RosBREED_snp_tart_cherry_a_Pp2_23794909View
7Sweet Cherry-RosBREED-3.8K-20202N/A65.94RosBREED_snp_tart_cherry_a_Pp2_23794909View
8Sweet Cherry-RosBREED-1.6K-20192N/A65.68RosBREED_snp_tart_cherry_a_Pp2_23794909View
9Sweet Cherry-BTK-Kordia-2013LG02N/A76.5ss490547536View
10Sweet Cherry-RL-Regina-2013LG02N/A75.3ss490547536View
11Sweet Cherry-BTK-F1-2013LG02N/A78.4ss490547536View
Alignments
Feature NameTypeLocationAnalysis
scaffold_2 supercontig scaffold_2:23794909..23794909. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp02 chromosome Pp02:27369076..27369076. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr2 chromosome PAV_r1.0chr2:21956990..21956990. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)