RosBREED_snp_tart_cherry_a_Pp1_26028238, RosBREED_snp_tart_cherry_a_Pp1_26028238 (genetic_marker) Prunus cerasus

Marker Overview
NameRosBREED_snp_tart_cherry_a_Pp1_26028238
AliasRosBREED_snp_tart_1_26028238
ss490546322
rs268600307
Rtart_1_26028238
dbSNP IDss490546322
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_tart_cherry_a_Pp1_26028238
TypeSNP
SNP AllelesT/C
SpeciesPrunus cerasus
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rtart_1_26028238Rtart_1_26028238Prunus cerasusmarker_locus
RosBREED_snp_tart_cherry_a_Pp1_26028238RosBREED_snp_tart_cherry_a_Pp1_26028238Prunus cerasusmarker_locus
RosBREED_snp_tart_cherry_a_Pp1_26028238RosBREED_snp_tart_cherry_a_Pp1_26028238-71.94Prunus cerasusmarker_locus
RosBREED_snp_tart_cherry_a_Pp1_26028238RosBREED_snp_tart_cherry_a_Pp1_26028238-79.286Prunus cerasusmarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-01-22Pav-HB-01-22Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-01-22_2Prunus cerasushaplotype
3Pav-HB-01-22_3Prunus cerasushaplotype
4Pav-HB-01-22_4Prunus cerasushaplotype
5Pav-HB-01-22_5Prunus cerasushaplotype
6Pav-HB-01-22_6Prunus cerasushaplotype
7Pav-HB-01-22_7Prunus cerasushaplotype
8Pav-HB-01-22_8Prunus cerasushaplotype
9Pav-HB-01-22_9Prunus cerasushaplotype
10Pav-HB-01-22_10Prunus cerasushaplotype
11Pav-HB-01-22_11Prunus cerasushaplotype
12Pav-HB-01-22_12Prunus cerasushaplotype
13Pav-HB-01-22_13Prunus cerasushaplotype
14Pav-HB-01-22_14Prunus cerasushaplotype
15Pav-HB-01-22_15Prunus cerasushaplotype
16Pav-HB-01-22_16Prunus cerasushaplotype
17Pav-HB-01-22_17Prunus cerasushaplotype
18Pav-HB-01-22_18Prunus cerasushaplotype
19Pav-HB-01-22_19Prunus cerasushaplotype
20Pav-HB-01-22_20Prunus cerasushaplotype
21Pav-HB-01-22_21Prunus cerasushaplotype
22Pav-HB-01-22_22Prunus cerasushaplotype
23Pav-HB-01-22_23Prunus cerasushaplotype
24Pav-HB-01-22_24Prunus cerasushaplotype
25Pav-HB-01-22_25Prunus cerasushaplotype
26Pav-HB-01-22_26Prunus cerasushaplotype
27Pav-HB-01-22_27Prunus cerasushaplotype
28Pav-HB-01-22_28Prunus cerasushaplotype
29Pav-HB-01-22_29Prunus cerasushaplotype
30Pav-HB-01-22_30Prunus cerasushaplotype
31Pav-HB-01-22_31Prunus cerasushaplotype
32Pav-HB-01-22_32Prunus cerasushaplotype
33Pav-HB-01-22_33Prunus cerasushaplotype
34Pav-HB-01-22_34Prunus cerasushaplotype
35Pav-HB-01-22_35Prunus cerasushaplotype
36Pav-HB-01-22_36Prunus cerasushaplotype
37Pav-HB-01-22_37Prunus cerasushaplotype
38Pav-HB-01-22_38Prunus cerasushaplotype
39Pav-HB-01-22_39Prunus cerasushaplotype
40Pav-HB-01-22_40Prunus cerasushaplotype
41Pav-HB-01-22_41Prunus cerasushaplotype
42Pav-HB-01-22_42Prunus cerasushaplotype
43Pav-HB-01-22_43Prunus cerasushaplotype
44Pav-HB-01-22_44Prunus cerasushaplotype
45Pav-HB-01-22_45Prunus cerasushaplotype
46Pav-HB-01-22_46Prunus cerasushaplotype
47Pav-HB-01-22_47Prunus cerasushaplotype
48Pav-HB-01-22_48Prunus cerasushaplotype
49Pav-HB-01-22_49Prunus cerasushaplotype
50Pav-HB-01-22_50Prunus cerasushaplotype
51Pav-HB-01-22_51Prunus cerasushaplotype
52Pav-HB-01-22_52Prunus cerasushaplotype
53Pav-HB-01-22_53Prunus cerasushaplotype
54Pav-HB-01-22_54Prunus cerasushaplotype
55Pav-HB-01-22_55Prunus cerasushaplotype
56Pav-HB-01-22_56Prunus cerasushaplotype
57Pav-HB-01-22_57Prunus cerasushaplotype
58Pav-HB-01-22_58Prunus cerasushaplotype
59Pav-HB-01-22_59Prunus cerasushaplotype
60Pav-HB-01-22_60Prunus cerasushaplotype
61Pav-HB-01-22_61Prunus cerasushaplotype
62Pav-HB-01-22_62Prunus cerasushaplotype
63Pav-HB-01-22_63Prunus cerasushaplotype
64Pav-HB-01-22_64Prunus cerasushaplotype
65Pav-HB-01-22_65Prunus cerasushaplotype
66Pav-HB-01-22_66Prunus cerasushaplotype
67Pav-HB-01-22_67Prunus cerasushaplotype
68Pav-HB-01-22_68Prunus cerasushaplotype
69Pav-HB-01-22_69Prunus cerasushaplotype
70Pav-HB-01-22_70Prunus cerasushaplotype
71Pav-HB-01-22_71Prunus cerasushaplotype
72Pav-HB-01-22_72Prunus cerasushaplotype
73Pav-HB-01-22_73Prunus cerasushaplotype
74Pav-HB-01-22_74Prunus cerasushaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015G1N/A69.27Rtart_1_26028238View
2Prunus-TE-6K cherry SNP-estimate1N/A34.82RosBREED_snp_tart_cherry_a_Pp1_26028238View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A92.42RosBREED_snp_tart_cherry_a_Pp1_26028238View
4Sweet Cherry-RG-F1-2014G1N/A80RosBREED_snp_tart_cherry_a_Pp1_26028238View
5Sweet Cherry-RosBREED-3.8K-20201N/A72.72RosBREED_snp_tart_cherry_a_Pp1_26028238View
6Sweet Cherry-RosBREED-1.6K-20191N/A71.94RosBREED_snp_tart_cherry_a_Pp1_26028238View
7Sweet Cherry-S-F11N/A39.16RosBREED_snp_tart_cherry_a_Pp1_26028238View
8Sweet Cherry-AxS-F11N/A93.03RosBREED_snp_tart_cherry_a_Pp1_26028238View
9Sour Cherry-M172x25-F1LG1N/A71.94RosBREED_snp_tart_cherry_a_Pp1_26028238View
10SourCherry-Montx25-F1LG1N/A71.94RosBREED_snp_tart_cherry_a_Pp1_26028238View
11SourCherry-25x25-F1LG1N/A71.94RosBREED_snp_tart_cherry_a_Pp1_26028238View
12Sour Cherry-US-F1LG1N/A71.94RosBREED_snp_tart_cherry_a_Pp1_26028238View
13SourCherry-RE-F1LG1N/A71.94RosBREED_snp_tart_cherry_a_Pp1_26028238View
14SweetCherry-FX-F1-FercerF1N/A79.29RosBREED_snp_tart_cherry_a_Pp1_26028238View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:26028238..26028238. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:27002841..27002841. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:20932129..20932129. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)