RosBREED_snp_tart_cherry_a_Pp1_34916586, RosBREED_snp_tart_cherry_a_Pp1_34916586 (genetic_marker) Prunus cerasus

Marker Overview
NameRosBREED_snp_tart_cherry_a_Pp1_34916586
AliasRosBREED_snp_tart_1_34916586
ss490546645
rs268600387
Rtart_1_34916586
dbSNP IDss490546645
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_tart_cherry_a_Pp1_34916586
TypeSNP
SNP AllelesT/C
SpeciesPrunus cerasus
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rtart_1_34916586Rtart_1_34916586Prunus cerasusmarker_locus
RosBREED_snp_tart_cherry_a_Pp1_34916586RosBREED_snp_tart_cherry_a_Pp1_34916586Prunus cerasusmarker_locus
ss490546645ss490546645Prunus cerasusmarker_locus
RosBREED_snp_tart_cherry_a_Pp1_34916586RosBREED_snp_tart_cherry_a_Pp1_34916586-105.96Prunus cerasusmarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-01-30Pav-HB-01-30Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-01-30_2Prunus cerasushaplotype
3Pav-HB-01-30_3Prunus cerasushaplotype
4Pav-HB-01-30_4Prunus cerasushaplotype
5Pav-HB-01-30_5Prunus cerasushaplotype
6Pav-HB-01-30_6Prunus cerasushaplotype
7Pav-HB-01-30_7Prunus cerasushaplotype
8Pav-HB-01-30_8Prunus cerasushaplotype
9Pav-HB-01-30_9Prunus cerasushaplotype
10Pav-HB-01-30_10Prunus cerasushaplotype
11Pav-HB-01-30_11Prunus cerasushaplotype
12Pav-HB-01-30_12Prunus cerasushaplotype
13Pav-HB-01-30_13Prunus cerasushaplotype
14Pav-HB-01-30_14Prunus cerasushaplotype
15Pav-HB-01-30_15Prunus cerasushaplotype
16Pav-HB-01-30_16Prunus cerasushaplotype
17Pav-HB-01-30_17Prunus cerasushaplotype
18Pav-HB-01-30_18Prunus cerasushaplotype
19Pav-HB-01-30_19Prunus cerasushaplotype
20Pav-HB-01-30_20Prunus cerasushaplotype
21Pav-HB-01-30_21Prunus cerasushaplotype
22Pav-HB-01-30_22Prunus cerasushaplotype
23Pav-HB-01-30_23Prunus cerasushaplotype
24Pav-HB-01-30_24Prunus cerasushaplotype
25Pav-HB-01-30_25Prunus cerasushaplotype
26Pav-HB-01-30_26Prunus cerasushaplotype
27Pav-HB-01-30_27Prunus cerasushaplotype
28Pav-HB-01-30_28Prunus cerasushaplotype
29Pav-HB-01-30_29Prunus cerasushaplotype
30Pav-HB-01-30_30Prunus cerasushaplotype
31Pav-HB-01-30_31Prunus cerasushaplotype
32Pav-HB-01-30_32Prunus cerasushaplotype
33Pav-HB-01-30_33Prunus cerasushaplotype
34Pav-HB-01-30_34Prunus cerasushaplotype
35Pav-HB-01-30_35Prunus cerasushaplotype
36Pav-HB-01-30_36Prunus cerasushaplotype
37Pav-HB-01-30_37Prunus cerasushaplotype
38Pav-HB-01-30_38Prunus cerasushaplotype
39Pav-HB-01-30_39Prunus cerasushaplotype
40Pav-HB-01-30_40Prunus cerasushaplotype
41Pav-HB-01-30_41Prunus cerasushaplotype
42Pav-HB-01-30_42Prunus cerasushaplotype
43Pav-HB-01-30_43Prunus cerasushaplotype
44Pav-HB-01-30_44Prunus cerasushaplotype
45Pav-HB-01-30_45Prunus cerasushaplotype
46Pav-HB-01-30_46Prunus cerasushaplotype
47Pav-HB-01-30_47Prunus cerasushaplotype
48Pav-HB-01-30_48Prunus cerasushaplotype
49Pav-HB-01-30_49Prunus cerasushaplotype
50Pav-HB-01-30_50Prunus cerasushaplotype
51Pav-HB-01-30_51Prunus cerasushaplotype
52Pav-HB-01-30_52Prunus cerasushaplotype
53Pav-HB-01-30_53Prunus cerasushaplotype
54Pav-HB-01-30_54Prunus cerasushaplotype
55Pav-HB-01-30_55Prunus cerasushaplotype
56Pav-HB-01-30_56Prunus cerasushaplotype
57Pav-HB-01-30_57Prunus cerasushaplotype
58Pav-HB-01-30_58Prunus cerasushaplotype
59Pav-HB-01-30_59Prunus cerasushaplotype
60Pav-HB-01-30_60Prunus cerasushaplotype
61Pav-HB-01-30_61Prunus cerasushaplotype
62Pav-HB-01-30_62Prunus cerasushaplotype
63Pav-HB-01-30_63Prunus cerasushaplotype
64Pav-HB-01-30_64Prunus cerasushaplotype
65Pav-HB-01-30_65Prunus cerasushaplotype
66Pav-HB-01-30_66Prunus cerasushaplotype
67Pav-HB-01-30_67Prunus cerasushaplotype
68Pav-HB-01-30_68Prunus cerasushaplotype
69Pav-HB-01-30_69Prunus cerasushaplotype
70Pav-HB-01-30_70Prunus cerasushaplotype
71Pav-HB-01-30_71Prunus cerasushaplotype
72Pav-HB-01-30_72Prunus cerasushaplotype
73Pav-HB-01-30_73Prunus cerasushaplotype
74Pav-HB-01-30_74Prunus cerasushaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RL-F1-2015L1N/A104.92Rtart_1_34916586View
2Prunus-TE-6K cherry SNP-estimate1N/A51.18RosBREED_snp_tart_cherry_a_Pp1_34916586View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A130.79RosBREED_snp_tart_cherry_a_Pp1_34916586View
4Sweet Cherry-RosBREED-3.8K-20201N/A106.74RosBREED_snp_tart_cherry_a_Pp1_34916586View
5Sweet Cherry-RosBREED-1.6K-20191N/A105.96RosBREED_snp_tart_cherry_a_Pp1_34916586View
6Sweet Cherry-AxS-F11N/A137.48RosBREED_snp_tart_cherry_a_Pp1_34916586View
7Sweet Cherry-BTK-Black Tartarian-2013LG01N/A129.7ss490546645View
8Sweet Cherry-RL-Lapins-2013LG01N/A108.6ss490546645View
9Sweet Cherry-BTK-F1-2013LG01N/A113.4ss490546645View
10Sour Cherry-M172x25-F1LG1N/A105.96RosBREED_snp_tart_cherry_a_Pp1_34916586View
11SourCherry-Montx25-F1LG1N/A105.96RosBREED_snp_tart_cherry_a_Pp1_34916586View
12SourCherry-25x25-F1LG1N/A105.96RosBREED_snp_tart_cherry_a_Pp1_34916586View
13Sour Cherry-US-F1LG1N/A105.96RosBREED_snp_tart_cherry_a_Pp1_34916586View
14SourCherry-RE-F1LG1N/A105.96RosBREED_snp_tart_cherry_a_Pp1_34916586View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:34916586..34916586. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:35889794..35889794. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:30749681..30749681. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)