RosBREED_snp_tart_cherry_a_Pp1_40555324, RosBREED_snp_tart_cherry_a_Pp1_40555324 (genetic_marker) Prunus cerasus

Marker Overview
NameRosBREED_snp_tart_cherry_a_Pp1_40555324
AliasRosBREED_snp_tart_1_40555324
ss490546845
rs268600437
Rtart_1_40555324
dbSNP IDss490546845
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_tart_cherry_a_Pp1_40555324
TypeSNP
SNP AllelesA/C
SpeciesPrunus cerasus
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rtart_1_40555324Rtart_1_40555324Prunus cerasusmarker_locus
RosBREED_snp_tart_cherry_a_Pp1_40555324RosBREED_snp_tart_cherry_a_Pp1_40555324Prunus cerasusmarker_locus
ss490546845ss490546845Prunus cerasusmarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-01-39Pav-HB-01-39Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-01-39_2Prunus cerasushaplotype
3Pav-HB-01-39_3Prunus cerasushaplotype
4Pav-HB-01-39_4Prunus cerasushaplotype
5Pav-HB-01-39_5Prunus cerasushaplotype
6Pav-HB-01-39_6Prunus cerasushaplotype
7Pav-HB-01-39_7Prunus cerasushaplotype
8Pav-HB-01-39_8Prunus cerasushaplotype
9Pav-HB-01-39_9Prunus cerasushaplotype
10Pav-HB-01-39_10Prunus cerasushaplotype
11Pav-HB-01-39_11Prunus cerasushaplotype
12Pav-HB-01-39_12Prunus cerasushaplotype
13Pav-HB-01-39_13Prunus cerasushaplotype
14Pav-HB-01-39_14Prunus cerasushaplotype
15Pav-HB-01-39_15Prunus cerasushaplotype
16Pav-HB-01-39_16Prunus cerasushaplotype
17Pav-HB-01-39_17Prunus cerasushaplotype
18Pav-HB-01-39_18Prunus cerasushaplotype
19Pav-HB-01-39_19Prunus cerasushaplotype
20Pav-HB-01-39_20Prunus cerasushaplotype
21Pav-HB-01-39_21Prunus cerasushaplotype
22Pav-HB-01-39_22Prunus cerasushaplotype
23Pav-HB-01-39_23Prunus cerasushaplotype
24Pav-HB-01-39_24Prunus cerasushaplotype
25Pav-HB-01-39_25Prunus cerasushaplotype
26Pav-HB-01-39_26Prunus cerasushaplotype
27Pav-HB-01-39_27Prunus cerasushaplotype
28Pav-HB-01-39_28Prunus cerasushaplotype
29Pav-HB-01-39_29Prunus cerasushaplotype
30Pav-HB-01-39_30Prunus cerasushaplotype
31Pav-HB-01-39_31Prunus cerasushaplotype
32Pav-HB-01-39_32Prunus cerasushaplotype
33Pav-HB-01-39_33Prunus cerasushaplotype
34Pav-HB-01-39_34Prunus cerasushaplotype
35Pav-HB-01-39_35Prunus cerasushaplotype
36Pav-HB-01-39_36Prunus cerasushaplotype
37Pav-HB-01-39_37Prunus cerasushaplotype
38Pav-HB-01-39_38Prunus cerasushaplotype
39Pav-HB-01-39_39Prunus cerasushaplotype
40Pav-HB-01-39_40Prunus cerasushaplotype
41Pav-HB-01-39_41Prunus cerasushaplotype
42Pav-HB-01-39_42Prunus cerasushaplotype
43Pav-HB-01-39_43Prunus cerasushaplotype
44Pav-HB-01-39_44Prunus cerasushaplotype
45Pav-HB-01-39_45Prunus cerasushaplotype
46Pav-HB-01-39_46Prunus cerasushaplotype
47Pav-HB-01-39_47Prunus cerasushaplotype
48Pav-HB-01-39_48Prunus cerasushaplotype
49Pav-HB-01-39_49Prunus cerasushaplotype
50Pav-HB-01-39_50Prunus cerasushaplotype
51Pav-HB-01-39_51Prunus cerasushaplotype
52Pav-HB-01-39_52Prunus cerasushaplotype
53Pav-HB-01-39_53Prunus cerasushaplotype
54Pav-HB-01-39_54Prunus cerasushaplotype
55Pav-HB-01-39_55Prunus cerasushaplotype
56Pav-HB-01-39_56Prunus cerasushaplotype
57Pav-HB-01-39_57Prunus cerasushaplotype
58Pav-HB-01-39_58Prunus cerasushaplotype
59Pav-HB-01-39_59Prunus cerasushaplotype
60Pav-HB-01-39_60Prunus cerasushaplotype
61Pav-HB-01-39_61Prunus cerasushaplotype
62Pav-HB-01-39_62Prunus cerasushaplotype
63Pav-HB-01-39_63Prunus cerasushaplotype
64Pav-HB-01-39_64Prunus cerasushaplotype
65Pav-HB-01-39_65Prunus cerasushaplotype
66Pav-HB-01-39_66Prunus cerasushaplotype
67Pav-HB-01-39_67Prunus cerasushaplotype
68Pav-HB-01-39_68Prunus cerasushaplotype
69Pav-HB-01-39_69Prunus cerasushaplotype
70Pav-HB-01-39_70Prunus cerasushaplotype
71Pav-HB-01-39_71Prunus cerasushaplotype
72Pav-HB-01-39_72Prunus cerasushaplotype
73Pav-HB-01-39_73Prunus cerasushaplotype
74Pav-HB-01-39_74Prunus cerasushaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RL-F1-2015L1N/A121.76Rtart_1_40555324View
2Prunus-TE-6K cherry SNP-estimate1N/A70.04RosBREED_snp_tart_cherry_a_Pp1_40555324View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A172.09RosBREED_snp_tart_cherry_a_Pp1_40555324View
4Sweet Cherry-V-F1LG1N/A138.7RosBREED_snp_tart_cherry_a_Pp1_40555324View
5Sweet Cherry-VxC-F1LG1N/A127.97RosBREED_snp_tart_cherry_a_Pp1_40555324View
6Sweet Cherry-BCxBC-F2LG1N/A106.54RosBREED_snp_tart_cherry_a_Pp1_40555324View
7Sweet Cherry-RL-F1-2014L1N/A140.8RosBREED_snp_tart_cherry_a_Pp1_40555324View
8Sweet Cherry-RosBREED-3.8K-20201N/A124.66RosBREED_snp_tart_cherry_a_Pp1_40555324View
9Sweet Cherry-RosBREED-1.6K-20191N/A123.88RosBREED_snp_tart_cherry_a_Pp1_40555324View
10Sweet Cherry-AxS-F11N/A162.62RosBREED_snp_tart_cherry_a_Pp1_40555324View
11Sweet Cherry-V-F1-6+9K_array1N/A120.55RosBREED_snp_tart_cherry_a_Pp1_40555324View
12Sweet Cherry-VxC-F1-6+9K_array1N/A151.16RosBREED_snp_tart_cherry_a_Pp1_40555324View
13Sweet Cherry-RL-Lapins-2013LG01N/A125.6ss490546845View
14Sweet Cherry-RL-F1-2013LG01N/A123.9ss490546845View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:40555324..40555324. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:41528590..41528590. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:36266868..36266868. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)