RosBREED_snp_tart_cherry_a_Pp1_35888929, RosBREED_snp_tart_cherry_a_Pp1_35888929 (genetic_marker) Prunus cerasus

Marker Overview
NameRosBREED_snp_tart_cherry_a_Pp1_35888929
AliasRosBREED_snp_tart_1_35888929
ss490546694
rs268600399
Rtart_1_35888929
dbSNP IDss490546694
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_tart_cherry_a_Pp1_35888929
TypeSNP
SNP AllelesT/G
SpeciesPrunus cerasus
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rtart_1_35888929Rtart_1_35888929Prunus cerasusmarker_locus
RosBREED_snp_tart_cherry_a_Pp1_35888929RosBREED_snp_tart_cherry_a_Pp1_35888929Prunus cerasusmarker_locus
ss490546694ss490546694Prunus cerasusmarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-01-33Pav-HB-01-33Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-01-33_2Prunus cerasushaplotype
3Pav-HB-01-33_3Prunus cerasushaplotype
4Pav-HB-01-33_4Prunus cerasushaplotype
5Pav-HB-01-33_5Prunus cerasushaplotype
6Pav-HB-01-33_6Prunus cerasushaplotype
7Pav-HB-01-33_7Prunus cerasushaplotype
8Pav-HB-01-33_8Prunus cerasushaplotype
9Pav-HB-01-33_9Prunus cerasushaplotype
10Pav-HB-01-33_10Prunus cerasushaplotype
11Pav-HB-01-33_11Prunus cerasushaplotype
12Pav-HB-01-33_12Prunus cerasushaplotype
13Pav-HB-01-33_13Prunus cerasushaplotype
14Pav-HB-01-33_14Prunus cerasushaplotype
15Pav-HB-01-33_15Prunus cerasushaplotype
16Pav-HB-01-33_16Prunus cerasushaplotype
17Pav-HB-01-33_17Prunus cerasushaplotype
18Pav-HB-01-33_18Prunus cerasushaplotype
19Pav-HB-01-33_19Prunus cerasushaplotype
20Pav-HB-01-33_20Prunus cerasushaplotype
21Pav-HB-01-33_21Prunus cerasushaplotype
22Pav-HB-01-33_22Prunus cerasushaplotype
23Pav-HB-01-33_23Prunus cerasushaplotype
24Pav-HB-01-33_24Prunus cerasushaplotype
25Pav-HB-01-33_25Prunus cerasushaplotype
26Pav-HB-01-33_26Prunus cerasushaplotype
27Pav-HB-01-33_27Prunus cerasushaplotype
28Pav-HB-01-33_28Prunus cerasushaplotype
29Pav-HB-01-33_29Prunus cerasushaplotype
30Pav-HB-01-33_30Prunus cerasushaplotype
31Pav-HB-01-33_31Prunus cerasushaplotype
32Pav-HB-01-33_32Prunus cerasushaplotype
33Pav-HB-01-33_33Prunus cerasushaplotype
34Pav-HB-01-33_34Prunus cerasushaplotype
35Pav-HB-01-33_35Prunus cerasushaplotype
36Pav-HB-01-33_36Prunus cerasushaplotype
37Pav-HB-01-33_37Prunus cerasushaplotype
38Pav-HB-01-33_38Prunus cerasushaplotype
39Pav-HB-01-33_39Prunus cerasushaplotype
40Pav-HB-01-33_40Prunus cerasushaplotype
41Pav-HB-01-33_41Prunus cerasushaplotype
42Pav-HB-01-33_42Prunus cerasushaplotype
43Pav-HB-01-33_43Prunus cerasushaplotype
44Pav-HB-01-33_44Prunus cerasushaplotype
45Pav-HB-01-33_45Prunus cerasushaplotype
46Pav-HB-01-33_46Prunus cerasushaplotype
47Pav-HB-01-33_47Prunus cerasushaplotype
48Pav-HB-01-33_48Prunus cerasushaplotype
49Pav-HB-01-33_49Prunus cerasushaplotype
50Pav-HB-01-33_50Prunus cerasushaplotype
51Pav-HB-01-33_51Prunus cerasushaplotype
52Pav-HB-01-33_52Prunus cerasushaplotype
53Pav-HB-01-33_53Prunus cerasushaplotype
54Pav-HB-01-33_54Prunus cerasushaplotype
55Pav-HB-01-33_55Prunus cerasushaplotype
56Pav-HB-01-33_56Prunus cerasushaplotype
57Pav-HB-01-33_57Prunus cerasushaplotype
58Pav-HB-01-33_58Prunus cerasushaplotype
59Pav-HB-01-33_59Prunus cerasushaplotype
60Pav-HB-01-33_60Prunus cerasushaplotype
61Pav-HB-01-33_61Prunus cerasushaplotype
62Pav-HB-01-33_62Prunus cerasushaplotype
63Pav-HB-01-33_63Prunus cerasushaplotype
64Pav-HB-01-33_64Prunus cerasushaplotype
65Pav-HB-01-33_65Prunus cerasushaplotype
66Pav-HB-01-33_66Prunus cerasushaplotype
67Pav-HB-01-33_67Prunus cerasushaplotype
68Pav-HB-01-33_68Prunus cerasushaplotype
69Pav-HB-01-33_69Prunus cerasushaplotype
70Pav-HB-01-33_70Prunus cerasushaplotype
71Pav-HB-01-33_71Prunus cerasushaplotype
72Pav-HB-01-33_72Prunus cerasushaplotype
73Pav-HB-01-33_73Prunus cerasushaplotype
74Pav-HB-01-33_74Prunus cerasushaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RL-F1-2015R1N/A110.59Rtart_1_35888929View
2Prunus-TE-6K cherry SNP-estimate1N/A54.56RosBREED_snp_tart_cherry_a_Pp1_35888929View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A137.5RosBREED_snp_tart_cherry_a_Pp1_35888929View
4Sweet Cherry-RosBREED-3.8K-20201N/A112.15RosBREED_snp_tart_cherry_a_Pp1_35888929View
5Sweet Cherry-RosBREED-1.6K-20191N/A111.37RosBREED_snp_tart_cherry_a_Pp1_35888929View
6Sweet Cherry-RL-Regina-2013LG01N/A111.2ss490546694View
7Sweet Cherry-RL-F1-2013LG01N/A111.4ss490546694View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:35888929..35888929. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:36862141..36862141. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:31896613..31896613. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)