RosBREEDSNP_SNP_GA_26726638_Lg1_01228_MAF50_1651849_exon2, RosBREEDSNP_SNP_GA_26726638_Lg1_01228_MAF50_1651849_exon2 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_GA_26726638_Lg1_01228_MAF50_1651849_exon2

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:

RosBREEDSNP_SNP_GA_26726638_Lg1_01228_MAF50_1651849_exon2

Type

SNP

SNP Alleles

A/G

Species

Publication

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2013	Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-M432-2013	1	N/A	44.24	RosBREEDSNP_SNP_GA_26726638_Lg1_01228_MAF50_1651849_exon2	View
2	Apple-M432-2013-physical-Malus-domestica	1	N/A	26726638	RosBREEDSNP_SNP_GA_26726638_Lg1_01228_MAF50_1651849_exon2	View
3	Apple-Honeycrisp_Consensus-F1	1	N/A	38.79	RosBREEDSNP_SNP_GA_26726638_Lg1_01228_MAF50_1651849_exon2	View
4	Pear-PH-CG-2017	LG1	N/A	50.55	RosBREEDSNP_SNP_GA_26726638_Lg1_01228_MAF50_1651849_exon2	View

Alignments

Feature Name	Type	Location	Analysis
MDC003653.304	contig	MDC003653.304:9791..9791.	Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr01	chromosome	Chr01:26506072..26506072.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation