GDsnp00107, GDsnp00107 (genetic_marker) Malus x domestica

Marker Overview
NameGDsnp00107
dbSNP IDss475882273
SNP Array ID
480K SNP array for apple:AX-105197499
IRSC 9K SNP array for apple:GDsnp00107
20K SNP array for apple:GDsnp00107
50K SNP array for apple:AX-105197499
TypeSNP
SNP AllelesA/C
Probe 1GDsnp00107.probe: GACGAGGGGATAATGCATGGAAAAACATGTTACCCGAAACCATACATGCA
5' Flanking SequenceGATCCTAATAGTGACAGTAATTAATTGTTACACAAGCAACATGAATTGAAGACGAGGGGA TAATGCATGGAAAAACATGTTACCCGAAACCATACATGCA
3' Flanking SequenceATTTGCATTGGACCCTTTTAGATATTGCAAATAAAAATCACAAATTTATAGTTTATCTTT TCACAATNTTATAAATACAAAAGCAAAGTAATACNTATCC
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Publications
YearPublication
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2014Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh). PloS one. 2014; 9(10):e110377.
2016Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26.
2020Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple_HCGA_F11N/A18.85GDsnp00107View
2Apple_HC64_F11N/A17.32GDsnp00107View
3Apple_HCMO_F11N/A42.15GDsnp00107View
4Apple_HGMM_Consenus1N/A45.53GDsnp00107View
5Apple Integrated map1N/A59.2GDsnp00107View
6Apple-RosBREED-3.9K-20191N/A37.52GDsnp00107View
7Apple-NC-F11N/A68.57GDsnp00107View
8Apple-NCZFBB-consensus1N/A44.65GDsnp00107View
9Apple-ZF-F11N/A46.49GDsnp00107View
10Apple-consensus-Allard-2016LG1N/A43GDsnp00107View
11Apple-Honeycrisp_Consensus-F11N/A37.52GDsnp00107View
12Apple-GDxBr-F1-2013LG1N/A53.25GD_SNP00107View
Sequence
>GDsnp00107 ID=GDsnp00107; Name=GDsnp00107; organism=Malus x domestica; type=genetic_marker; length=75bp
CATGGAAAAACATGTTACCCGAAACCATACATGCA[A/C]ATTTGCATTG
GACCCTTTTAGATATTGCAAATAAA