RosBREEDSNP_SNP_AG_831641_Lg7_01172_MAF30_1633901_exon1, RosBREEDSNP_SNP_AG_831641_Lg7_01172_MAF30_1633901_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_AG_831641_Lg7_01172_MAF30_1633901_exon1
dbSNP IDss475883259
SNP Array ID
480K SNP array for apple:AX-115182354
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_AG_831641_Lg7_01172_MAF30_1633901_exon1
20K SNP array for apple:RosBREEDSNP_SNP_AG_831641_Lg7_01172_MAF30_1633901_exon1
50K SNP array for apple:AX-105223999
TypeSNP
SNP AllelesT/C
Probe 1RosBREEDSNP_SNP_AG_831641_Lg7_01172_MAF30_1633901_exon1.probe: CCTGACATGAACCCGGACTGACCGGATTTCTTGAGTATGGGGTCCTCCGA
5' Flanking SequenceGGTACGGAGTCAGCTGCGATCCCACAACCGGCCGAGTCGTCGACATTAATCTCCGAGGCG A
3' Flanking SequenceTCGGAGGACCCCATACTCAAGAAATCCGGTCAGTCCGGGTTCATGTCAGGATCTATCTCG C
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20139N/A55.76RosBREEDSNP_SNP_AG_831641_Lg7_01172_MAF30_1633901_exon1View
2Apple-M432-2013-physical-Malus-domestica7N/A831641RosBREEDSNP_SNP_AG_831641_Lg7_01172_MAF30_1633901_exon1View
3Apple-Honeycrisp_Consensus-F17N/A0RosBREEDSNP_SNP_AG_831641_Lg7_01172_MAF30_1633901_exon1View
4Apple-BB-F17N/A0.59RosBREEDSNP_SNP_AG_831641_Lg7_01172_MAF30_1633901_exon1View
5Apple-NC-F17N/A2.25RosBREEDSNP_SNP_AG_831641_Lg7_01172_MAF30_1633901_exon1View
6Apple-NCZFBB-consensus7N/A2.25RosBREEDSNP_SNP_AG_831641_Lg7_01172_MAF30_1633901_exon1View
7Apple-ZF-F17N/A1.15RosBREEDSNP_SNP_AG_831641_Lg7_01172_MAF30_1633901_exon1View
Sequence
>RosBREEDSNP_SNP_AG_831641_Lg7_01172_MAF30_1633901_exon1 ID=RosBREEDSNP_SNP_AG_831641_Lg7_01172_MAF30_1633901_exon1; Name=RosBREEDSNP_SNP_AG_831641_Lg7_01172_MAF30_1633901_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
ACCGGCCGAGTCGTCGACATTAATCTCCGAGGCGA[A/G]TCGGAGGACC
CCATACTCAAGAAATCCGGTCAGTC
Alignments
Feature NameTypeLocationAnalysis
MDC017528.105 contig MDC017528.105:23410..23410. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr07 chromosome Chr07:640977..640977- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation