RosBREEDSNP_SNP_CT_35105749_Lg12_01665_MAF20_914476_exon1, RosBREEDSNP_SNP_CT_35105749_Lg12_01665_MAF20_914476_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_CT_35105749_Lg12_01665_MAF20_914476_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_CT_35105749_Lg12_01665_MAF20_914476_exon1
50K SNP array for apple:	AX-105174866

Type

SNP

SNP Alleles

T/C

5' Flanking Sequence

GTATGAATTTCCAAATGCAGCTGCGGTGGTAGATG

3' Flanking Sequence

CTTACTGTAGAGTACACAGACAAAGTGGGAGAAA

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-RosBREED-3.9K-2019	12	N/A	65.29	RosBREEDSNP_SNP_CT_35105749_Lg12_01665_MAF20_914476_exon1	View

Sequence

>RosBREEDSNP_SNP_CT_35105749_Lg12_01665_MAF20_914476_exon1 ID=RosBREEDSNP_SNP_CT_35105749_Lg12_01665_MAF20_914476_exon1; Name=RosBREEDSNP_SNP_CT_35105749_Lg12_01665_MAF20_914476_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
GTATGAATTTCCAAATGCAGCTGCGGTGGTAGATGYCTTACTGTAGAGTA
CACAGACAAAGTGGGAGAAA

Alignments

Feature Name	Type	Location	Analysis
MDC006456.378	contig	MDC006456.378:9913..9913.	Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr12	chromosome	Chr12:31693131..31693131.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation