RosBREEDSNP_SNP_TC_18343847_Lg15_RosCOS1184_MAF40_MDP0000157185_exon1, RosBREEDSNP_SNP_TC_18343847_Lg15_RosCOS1184_MAF40_MDP0000157185_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_TC_18343847_Lg15_RosCOS1184_MAF40_MDP0000157185_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:

RosBREEDSNP_SNP_TC_18343847_Lg15_RosCOS1184_MAF40_MDP0000157185_exon1

Type

SNP

SNP Alleles

N/A

Species

Publication

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2013	Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-M432-2013	1	N/A	9.77	RosBREEDSNP_SNP_TC_18343847_Lg15_RosCOS1184_MAF40_MDP0000157185_exon1	View
2	Apple-M432-2013-physical-Malus-domestica	15	N/A	18343847	RosBREEDSNP_SNP_TC_18343847_Lg15_RosCOS1184_MAF40_MDP0000157185_exon1	View
3	Apple-Honeycrisp_Consensus-F1	15	N/A	55.53	RosBREEDSNP_SNP_TC_18343847_Lg15_RosCOS1184_MAF40_MDP0000157185_exon1	View

Alignments

Feature Name	Type	Location	Analysis
MDC002285.478	contig	MDC002285.478:25133..25133.	Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr15	chromosome	Chr15:18962865..18962865.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation