RosBREEDSNP_SNP_AG_27095198_Lg1_01693_MAF30_332314_exon1, RosBREEDSNP_SNP_AG_27095198_Lg1_01693_MAF30_332314_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_AG_27095198_Lg1_01693_MAF30_332314_exon1
dbSNP IDss475876871
SNP Array ID
480K SNP array for apple:AX-115182268
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_AG_27095198_Lg1_01693_MAF30_332314_exon1
20K SNP array for apple:RosBREEDSNP_SNP_AG_27095198_Lg1_01693_MAF30_332314_exon1
TypeSNP
SNP AllelesA/G
Probe 1RosBREEDSNP_SNP_AG_27095198_Lg1_01693_MAF30_332314_exon1.probe: GTTAACGAATTGTTCGAAATTGATAGCTATTGTGATGTGCAGCTGAATGC
5' Flanking SequenceTTCTGTTCTCAGTTAACGAATTGTTCGAAATTGATAGCTATTGTGATGTGCAGCTGAATG C
3' Flanking SequenceGCATACGATGAGCTAACTTCCAAGAGACCTTGCGGGCCAAATAAGAGGGCAATACGCGGA G
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Libraries
Library NameType
20K SNP array for appleSNP_chip
480K SNP array for appleSNP_chip
IRSC 9K SNP array for appleSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-MM-F11N/A43.2c475876871View
2apple-RosBREED-sweetness-2015LG1N/A61.1ss475876871View
3Apple-Honeycrisp_Consensus-F11N/A39.4RosBREEDSNP_SNP_AG_27095198_Lg1_01693_MAF30_332314_exon1View
4Pear-PH-CG-2017LG7N/A12.93RosBREEDSNP_SNP_AG_27095198_Lg1_01693_MAF30_332314_exon1View
5Apple-RosBREED-3.9K-20191N/A39.4RosBREEDSNP_SNP_AG_27095198_Lg1_01693_MAF30_332314_exon1View
6Apple-consensus-Allard-2016LG1N/A48.1RosBREEDSNP_SNP_AG_27095198_Lg1_01693_MAF30_332314_exon1View
Sequence
>RosBREEDSNP_SNP_AG_27095198_Lg1_01693_MAF30_332314_exon1 ID=RosBREEDSNP_SNP_AG_27095198_Lg1_01693_MAF30_332314_exon1; Name=RosBREEDSNP_SNP_AG_27095198_Lg1_01693_MAF30_332314_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
GAAATTGATAGCTATTGTGATGTGCAGCTGAATGC[A/G]GCATACGATG
AGCTAACTTCCAAGAGACCTTGCGG
Alignments
Feature NameTypeLocationAnalysis
MDC010675.506 contig MDC010675.506:15117..15117. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr01 chromosome Chr01:26870224..26870224+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation