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Marker Overview
| Name | RosBREEDSNP_SNP_TC_1682643_Lg3_EB140229_MAF30_145018_exon1 |
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| dbSNP ID | ss475883015 |
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| SNP Array ID | | 480K SNP array for apple: | AX-105186402 | | IRSC 9K SNP array for apple: | RosBREEDSNP_SNP_TC_1682643_Lg3_EB140229_MAF30_145018_exon1 | | 20K SNP array for apple: | RosBREEDSNP_SNP_TC_1682643_Lg3_EB140229_MAF30_145018_exon1 | | 50K SNP array for apple: | AX-105186402 |
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| Type | SNP |
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| SNP Alleles | T/C |
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| Probe 1 | RosBREEDSNP_SNP_TC_1682643_Lg3_EB140229_MAF30_145018_exon1.probe: GCTGAGGCCCACTCGTCCTTGAACCAAAAACCGGACGACCTGAGCACCTT |
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| 5' Flanking Sequence | GAATCTCGGGGGCTGAGGCCCACTCGTCCTTGAACCAAAAACCGGACGACCTGAGCACCT
T |
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| 3' Flanking Sequence | CAGCACGACTCGAGAAGCTTCTCAGAGACGTCGGAGCCGAAGGCGTCGAACTCAGAGCCA
G |
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| Species | Malus x domestica |
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| Publication | [view all] |
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| Contact | Michela Troggio
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Analyses
This genetic_marker is derived from or has results from the following analyses
Publications
| Year | Publication |
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| 2014 | Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh). PloS one. 2014; 9(10):e110377. |
| 2013 | Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407. |
| 2020 | Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8 |
Sequence
>RosBREEDSNP_SNP_TC_1682643_Lg3_EB140229_MAF30_145018_exon1 ID=RosBREEDSNP_SNP_TC_1682643_Lg3_EB140229_MAF30_145018_exon1; Name=RosBREEDSNP_SNP_TC_1682643_Lg3_EB140229_MAF30_145018_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
TCCTTGAACCAAAAACCGGACGACCTGAGCACCTT[C/T]CAGCACGACT
CGAGAAGCTTCTCAGAGACGTCGGA
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