|
|
Marker Overview
| Name | RosBREEDSNP_SNP_AG_34439805_Lg3_02030_MAF50_1676194_exon1 |
|---|
| dbSNP ID | ss475877792 |
|---|
| SNP Array ID | | 480K SNP array for apple: | AX-115181874 | | IRSC 9K SNP array for apple: | RosBREEDSNP_SNP_AG_34439805_Lg3_02030_MAF50_1676194_exon1 | | 20K SNP array for apple: | RosBREEDSNP_SNP_AG_34439805_Lg3_02030_MAF50_1676194_exon1 |
|
|---|
| Type | SNP |
|---|
| SNP Alleles | T/C |
|---|
| Probe 1 | RosBREEDSNP_SNP_AG_34439805_Lg3_02030_MAF50_1676194_exon1.probe: TCAACTGCCTAGCAATCTCATATGAAATAAAAGCGTCAACAGCAGCATAC |
|---|
| 5' Flanking Sequence | AAGCCGAAGAGTGTGACGTTGAGCAGGTGGGACAGTCAGTGGCTTACTTATGCTCAGATT
C |
|---|
| 3' Flanking Sequence | GTATGCTGCTGTTGACGCTTTTATTTCATATGAGATTGCTAGGCAGTTGAATCTTAGGGG
T |
|---|
| Species | Malus x domestica |
|---|
| Publication | [view all] |
|---|
| Contact | Michela Troggio
|
|---|
Analyses
This genetic_marker is derived from or has results from the following analyses
Publications
| Year | Publication |
|---|
| 2014 | Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh). PloS one. 2014; 9(10):e110377. |
| 2012 | Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203. |
| 2016 | Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26. |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
|---|
| 1 | Apple-MM-F1 | 3 | N/A | 55.9 | c475877792 | View |
| 2 | Pear-PH-CG-2017 | LG3 | N/A | 77.33 | RosBREEDSNP_SNP_AG_34439805_Lg3_02030_MAF50_1676194_exon1 | View |
Sequence
>RosBREEDSNP_SNP_AG_34439805_Lg3_02030_MAF50_1676194_exon1 ID=RosBREEDSNP_SNP_AG_34439805_Lg3_02030_MAF50_1676194_exon1; Name=RosBREEDSNP_SNP_AG_34439805_Lg3_02030_MAF50_1676194_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
GTGGGACAGTCAGTGGCTTACTTATGCTCAGATTC[A/G]GTATGCTGCT
GTTGACGCTTTTATTTCATATGAGA
|
