RosBREEDSNP_SNP_CT_25878824_Lg3_01642_MAF20_1686543_exon1, RosBREEDSNP_SNP_CT_25878824_Lg3_01642_MAF20_1686543_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_CT_25878824_Lg3_01642_MAF20_1686543_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_CT_25878824_Lg3_01642_MAF20_1686543_exon1
50K SNP array for apple:	AX-105174583

Type

SNP

SNP Alleles

T/C

5' Flanking Sequence

TGGAGATAAGAGCTTTTCGTCTCAAGCAGGGCGTG

3' Flanking Sequence

TTTTGCAGTATTCTGGATATTGACAGGTACCATT

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Sequence

>RosBREEDSNP_SNP_CT_25878824_Lg3_01642_MAF20_1686543_exon1 ID=RosBREEDSNP_SNP_CT_25878824_Lg3_01642_MAF20_1686543_exon1; Name=RosBREEDSNP_SNP_CT_25878824_Lg3_01642_MAF20_1686543_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
TGGAGATAAGAGCTTTTCGTCTCAAGCAGGGCGTGYTTTTGCAGTATTCT
GGATATTGACAGGTACCATT

Alignments

Feature Name	Type	Location	Analysis
MDC018387.261	contig	MDC018387.261:5139..5139.	Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr03	chromosome	Chr03:25094861..25094861.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation