RosBREEDSNP_SNP_AG_7904398_Lg6_01954_MAF40_MDP0000479590_exon1, RosBREEDSNP_SNP_AG_7904398_Lg6_01954_MAF40_MDP0000479590_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_AG_7904398_Lg6_01954_MAF40_MDP0000479590_exon1
dbSNP IDss475878553
SNP Array ID
480K SNP array for apple:AX-105182900
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_AG_7904398_Lg6_01954_MAF40_MDP0000479590_exon1
20K SNP array for apple:RosBREEDSNP_SNP_AG_7904398_Lg6_01954_MAF40_MDP0000479590_exon1
50K SNP array for apple:AX-105182900
TypeSNP
SNP AllelesT/C
Probe 1RosBREEDSNP_SNP_AG_7904398_Lg6_01954_MAF40_MDP0000479590_exon1.probe: CGAAAATAACCAGCGATCGTGGTTCGGGGATTGAACGACAATTCCCATGC
5' Flanking SequenceCCATACGCGCGACAACCACTGGACAATGTACTTTGACGGCTCCAGTACGTCATCTTCGGC G
3' Flanking SequenceGCATGGGAATTGTCGTTCAATCCCCGAACCACGATCGCTGGTTATTTTCGCTTAAGTTGG A
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-MM-F16N/A5.9b475878553View
Sequence
>RosBREEDSNP_SNP_AG_7904398_Lg6_01954_MAF40_MDP0000479590_exon1 ID=RosBREEDSNP_SNP_AG_7904398_Lg6_01954_MAF40_MDP0000479590_exon1; Name=RosBREEDSNP_SNP_AG_7904398_Lg6_01954_MAF40_MDP0000479590_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
TGTACTTTGACGGCTCCAGTACGTCATCTTCGGCG[A/G]GCATGGGAAT
TGTCGTTCAATCCCCGAACCACGAT
Alignments
Feature NameTypeLocationAnalysis
MDC020827.212 contig MDC020827.212:23888..23888. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr06 chromosome Chr06:4612029..4612029- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation