GDsnp10005, GDsnp10005 (genetic_marker) Malus x domestica

Marker Overview
NameGDsnp10005
dbSNP IDss475882286
SNP Array ID
480K SNP array for apple:AX-105185243
IRSC 9K SNP array for apple:GDsnp10005
50K SNP array for apple:AX-105185243
TypeSNP
SNP AllelesR
5' Flanking SequenceAACTCAGTCCCCAAATATTCAGCTCATTAC
3' Flanking SequenceAGAGAAAGAGAGACATACATTTAATTAACAAAAT
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
480K SNP array for appleSNP_chip
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Publications
YearPublication
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2012Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203.
2016Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26.
2020Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple_HCGA_F11N/A17.22GDsnp10005View
2Apple_HC64_F11N/A12.75GDsnp10005View
3Apple_HCMO_F11N/A42.15GDsnp10005View
4Apple_HGMM_Consenus1N/A50GDsnp10005View
5Apple Integrated map1N/A62.9GDsnp10005View
6Apple-RosBREED-3.9K-20191N/A42.42GDsnp10005View
7Apple-MM-F11N/A48.4b475882286View
8apple-RosBREED-sweetness-2015LG1N/A62.9ss475882286View
9Apple-Honeycrisp_Consensus-F11N/A42.42GDsnp10005View
10Pear-PH-CG-2017LG1N/A56.84GDsnp10005View
Sequence
>GDsnp10005 ID=GDsnp10005; Name=GDsnp10005; organism=Malus x domestica; type=genetic_marker; length=70bp
AACTCAGTCCCCAAATATTCAGCTCATTAC[A/G]AGAGAAAGAGAGACA
TACATTTAATTAACAAAATA