RosBREEDSNP_SNP_GA_35492705_Lg1_02092_MAF50_1666970_exon1, RosBREEDSNP_SNP_GA_35492705_Lg1_02092_MAF50_1666970_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_GA_35492705_Lg1_02092_MAF50_1666970_exon1
Aliasss475876954
rs267609901
b475876954
SNP_GA_35492705_Lg1_02092_MAF50_1666970_exon1
AX-105201772
dbSNP IDss475876954
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_GA_35492705_Lg1_02092_MAF50_1666970_exon1
50K SNP array for apple:RosBREEDSNP_SNP_GA_35492705_Lg1_02092_MAF50_1666970_exon1
TypeSNP
SNP AllelesA/G
5' Flanking SequenceTCATTGAAGTGCAACTCTACATAGTTTACAACTCT
3' Flanking SequenceAAGTAGTCTTTATGCACCGCGGTCAGCAAACCTG
SpeciesMalus x domestica
PolymorphismP_ RosBREEDSNP_SNP_GA_35492705_Lg1_02092_MAF50_1666970_exon1
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_GA_35492705_Lg1_02092_MAF50_1666970_exon1RosBREEDSNP_SNP_GA_35492705_Lg1_02092_MAF50_1666970_exon1Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_GA_35492705_Lg1_02092_MAF50_1666970_exon1 ID=RosBREEDSNP_SNP_GA_35492705_Lg1_02092_MAF50_1666970_exon1|Name=RosBREEDSNP_SNP_GA_35492705_Lg1_02092_MAF50_1666970_exon1|organism=Malus x domestica|type=genetic_marker|length=70bp
TCATTGAAGTGCAACTCTACATAGTTTACAACTCTRAAGTAGTCTTTATG
CACCGCGGTCAGCAAACCTG
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20131N/A58.89RosBREEDSNP_SNP_GA_35492705_Lg1_02092_MAF50_1666970_exon1View
2Apple-M432-2013-physical-Malus-domestica1N/A35492705RosBREEDSNP_SNP_GA_35492705_Lg1_02092_MAF50_1666970_exon1View
3Apple-BB-F11N/A61.94RosBREEDSNP_SNP_GA_35492705_Lg1_02092_MAF50_1666970_exon1View
4Apple-NC-F11N/A92.99RosBREEDSNP_SNP_GA_35492705_Lg1_02092_MAF50_1666970_exon1View
5Apple-NCZFBB-consensus1N/A66.18RosBREEDSNP_SNP_GA_35492705_Lg1_02092_MAF50_1666970_exon1View
6Apple-ZF-F11N/A70.26RosBREEDSNP_SNP_GA_35492705_Lg1_02092_MAF50_1666970_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC000697.296 contig MDC000697.296:7998..7998. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr01 chromosome Chr01:31927785..31927785. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr01 chromosome Chr01:31961606..31961606. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr01 chromosome Chr01:31961605..31961605. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation