RosBREEDSNP_SNP_CT_14350830_Lg9_02046_MAF20_MDP0000159004_exon2, RosBREEDSNP_SNP_CT_14350830_Lg9_02046_MAF20_MDP0000159004_exon2 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CT_14350830_Lg9_02046_MAF20_MDP0000159004_exon2
dbSNP IDss475879433
SNP Array ID
480K SNP array for apple:AX-105219363
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CT_14350830_Lg9_02046_MAF20_MDP0000159004_exon2
20K SNP array for apple:RosBREEDSNP_SNP_CT_14350830_Lg9_02046_MAF20_MDP0000159004_exon2
50K SNP array for apple:AX-105219363
TypeSNP
SNP AllelesT/C
Probe 1RosBREEDSNP_SNP_CT_14350830_Lg9_02046_MAF20_MDP0000159004_exon2.probe: ACCTGACAAGGCTGTGCAGAGAAGGTATCCAGTGAGGCAATGTATCCAAT
5' Flanking SequenceTTTCAGATGTAACCTGACAAGGCTGTGCAGAGAAGGTATCCAGTGAGGCAATGTATCCAA T
3' Flanking SequenceGTCCTCGCAAGTATAGGCGCTGAAGCAGGAGAGGGGGAGAAGAAATGTGCTGCAGATCAA T
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-Honeycrisp_Consensus-F19N/A31.72RosBREEDSNP_SNP_CT_14350830_Lg9_02046_MAF20_MDP0000159004_exon2View
2Apple-RosBREED-3.9K-20199N/A31.72RosBREEDSNP_SNP_CT_14350830_Lg9_02046_MAF20_MDP0000159004_exon2View
3Apple-BB-F19N/A31.71RosBREEDSNP_SNP_CT_14350830_Lg9_02046_MAF20_MDP0000159004_exon2View
4Apple-NCZFBB-consensus9N/A36.4RosBREEDSNP_SNP_CT_14350830_Lg9_02046_MAF20_MDP0000159004_exon2View
5Apple-ZF-F19N/A42.94RosBREEDSNP_SNP_CT_14350830_Lg9_02046_MAF20_MDP0000159004_exon2View
Sequence
>RosBREEDSNP_SNP_CT_14350830_Lg9_02046_MAF20_MDP0000159004_exon2 ID=RosBREEDSNP_SNP_CT_14350830_Lg9_02046_MAF20_MDP0000159004_exon2; Name=RosBREEDSNP_SNP_CT_14350830_Lg9_02046_MAF20_MDP0000159004_exon2; organism=Malus x domestica; type=genetic_marker; length=75bp
GCAGAGAAGGTATCCAGTGAGGCAATGTATCCAAT[C/T]GTCCTCGCAA
GTATAGGCGCTGAAGCAGGAGAGGG
Alignments
Feature NameTypeLocationAnalysis
MDC002164.343 contig MDC002164.343:9305..9305. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr09 chromosome Chr09:13461417..13461417. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation