RosBREEDSNP_SNP_AG_16726719_Lg10_01710_MAF40_1666563_exon2, RosBREEDSNP_SNP_AG_16726719_Lg10_01710_MAF40_1666563_exon2 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_AG_16726719_Lg10_01710_MAF40_1666563_exon2

dbSNP ID

SNP Array ID

480K SNP array for apple:	AX-115182228
IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_AG_16726719_Lg10_01710_MAF40_1666563_exon2
20K SNP array for apple:	RosBREEDSNP_SNP_AG_16726719_Lg10_01710_MAF40_1666563_exon2

Type

SNP

SNP Alleles

T/C

Probe 1

RosBREEDSNP_SNP_AG_16726719_Lg10_01710_MAF40_1666563_exon2.probe: AATGCTGATGTCTCCACCCACAAATCTCTTGGTATCTTCATTCTTGTGCT

5' Flanking Sequence

GATAACGTGGTATGACCGGAATATATGTAACAAAAGAATGAGAACAAACCTGAAGACAAC C

3' Flanking Sequence

AGCACAAGAATGAAGATACCAAGAGATTTGTGGGTGGAGACATCAGCATTGAGCTTATTT T

Species

Malus x domestica

Publication

[view all]

Contact

Michela Troggio

Contact

Name

Details

Michela Troggio

First name:	Michela
Last name:	Troggio
Title:	Researcher
Institution:	Research and Innovation Centre, Fondazione Edmund Mach
Address:	Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:	Italy
Email:	ti.hcamf@oiggort.alehcim
Phone:	+39 0461 615111
Fax:	+39 0461 650218

Libraries


Library Name	Type
20K SNP array for apple	SNP_chip
480K SNP array for apple	SNP_chip
IRSC 9K SNP array for apple	SNP_chip

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2014	Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh). PloS one. 2014; 9(10):e110377.
2016	Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple_HCGA_F1	10	N/A	41.46	SNP_AG_16726719_Lg10_01710_MAF40_1666563_exon2	View
2	Apple_HC64_F1	10	N/A	47.47	SNP_AG_16726719_Lg10_01710_MAF40_1666563_exon2	View
3	Apple_HCMO_F1	10	N/A	33.33	SNP_AG_16726719_Lg10_01710_MAF40_1666563_exon2	View
4	Apple_HGMM_Consenus	10	N/A	41.1	SNP_AG_16726719_Lg10_01710_MAF40_1666563_exon2	View
5	Apple-RosBREED-3.9K-2019	10	N/A	37.04	SNP_AG_16726719_Lg10_01710_MAF40_1666563_exon2	View
6	Apple-Honeycrisp_Consensus-F1	10	N/A	37.04	RosBREEDSNP_SNP_AG_16726719_Lg10_01710_MAF40_1666563_exon2	View

Sequence

>RosBREEDSNP_SNP_AG_16726719_Lg10_01710_MAF40_1666563_exon2 ID=RosBREEDSNP_SNP_AG_16726719_Lg10_01710_MAF40_1666563_exon2; Name=RosBREEDSNP_SNP_AG_16726719_Lg10_01710_MAF40_1666563_exon2; organism=Malus x domestica; type=genetic_marker; length=75bp
GTAACAAAAGAATGAGAACAAACCTGAAGACAACC[A/G]AGCACAAGAA
TGAAGATACCAAGAGATTTGTGGGT

Alignments

Feature Name	Type	Location	Analysis
MDC018605.131	contig	MDC018605.131:24571..24571.	Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr10	chromosome	Chr10:23248921..23248921-	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation