RosBREEDSNP_SNP_GA_27524282_Lg14_00052_MAF10_1680012_exon5, RosBREEDSNP_SNP_GA_27524282_Lg14_00052_MAF10_1680012_exon5 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_GA_27524282_Lg14_00052_MAF10_1680012_exon5
dbSNP IDss475881152
SNP Array ID
480K SNP array for apple:AX-115181827
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_GA_27524282_Lg14_00052_MAF10_1680012_exon5
20K SNP array for apple:RosBREEDSNP_SNP_GA_27524282_Lg14_00052_MAF10_1680012_exon5
50K SNP array for apple:AX-105186793
TypeSNP
SNP AllelesA/G
Probe 1RosBREEDSNP_SNP_GA_27524282_Lg14_00052_MAF10_1680012_exon5.probe: AAGGTGGAAGGTTGTCCATCCCCACTTACATCCTCACATGCTCCCTCTTC
5' Flanking SequenceTCCATTCGTTGAAGGTGGAAGGTTGTCCATCCCCACTTACATCCTCACATGCTCCCTCTT C
3' Flanking SequenceCTAAGCTGACAAAGCACATAGAAGCAAGAGATTAACACTTAAATAGATATCGAGTCCCAA A
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-BB-F114N/A45.02RosBREEDSNP_SNP_GA_27524282_Lg14_00052_MAF10_1680012_exon5View
2Apple-NC-F114N/A58.62RosBREEDSNP_SNP_GA_27524282_Lg14_00052_MAF10_1680012_exon5View
3Apple-NCZFBB-consensus14N/A56.8RosBREEDSNP_SNP_GA_27524282_Lg14_00052_MAF10_1680012_exon5View
4Apple-ZF-F114N/A60.5RosBREEDSNP_SNP_GA_27524282_Lg14_00052_MAF10_1680012_exon5View
Sequence
>RosBREEDSNP_SNP_GA_27524282_Lg14_00052_MAF10_1680012_exon5 ID=RosBREEDSNP_SNP_GA_27524282_Lg14_00052_MAF10_1680012_exon5; Name=RosBREEDSNP_SNP_GA_27524282_Lg14_00052_MAF10_1680012_exon5; organism=Malus x domestica; type=genetic_marker; length=75bp
CCATCCCCACTTACATCCTCACATGCTCCCTCTTC[A/G]CTAAGCTGAC
AAAGCACATAGAAGCAAGAGATTAA
Alignments
Feature NameTypeLocationAnalysis
MDC009243.279 contig MDC009243.279:27005..27005. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr14 chromosome Chr14:26520561..26520561+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr06 chromosome Chr06:30570492..30570492+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation