RosBREEDSNP_SNP_AG_20455509_Lg16_01237_MAF50_484960_exon3, RosBREEDSNP_SNP_AG_20455509_Lg16_01237_MAF50_484960_exon3 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_AG_20455509_Lg16_01237_MAF50_484960_exon3

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:

RosBREEDSNP_SNP_AG_20455509_Lg16_01237_MAF50_484960_exon3

Type

SNP

SNP Alleles

A/G

Species

Publication

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2013	Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-M432-2013	13	N/A	42.68	RosBREEDSNP_SNP_AG_20455509_Lg16_01237_MAF50_484960_exon3	View
2	Apple-M432-2013-physical-Malus-domestica	16	N/A	20455509	RosBREEDSNP_SNP_AG_20455509_Lg16_01237_MAF50_484960_exon3	View

Alignments

Feature Name	Type	Location	Analysis
MDC002099.492	contig	MDC002099.492:4624..4624.	Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr13	chromosome	Chr13:12284419..12284419.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation