RosBREEDSNP_SNP_CT_12901428_Lg2_01552_MAF30_525812_exon2, RosBREEDSNP_SNP_CT_12901428_Lg2_01552_MAF30_525812_exon2 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CT_12901428_Lg2_01552_MAF30_525812_exon2
Aliasss475877196
rs267610143
c475877196
SNP_CT_12901428_Lg2_01552_MAF30_525812_exon2
AX-105176901
dbSNP IDss475877196
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CT_12901428_Lg2_01552_MAF30_525812_exon2
50K SNP array for apple:RosBREEDSNP_SNP_CT_12901428_Lg2_01552_MAF30_525812_exon2
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTTGCAGGTGCTTTTGGGCCCTTTGGCTGGCTCCTT
3' Flanking SequenceTTCTTGGCCCTTGAAAAATTGAATGCAATTATAC
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_CT_12901428_Lg2_01552_MAF30_525812_exon2RosBREEDSNP_SNP_CT_12901428_Lg2_01552_MAF30_525812_exon2Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_CT_12901428_Lg2_01552_MAF30_525812_exon2 ID=RosBREEDSNP_SNP_CT_12901428_Lg2_01552_MAF30_525812_exon2|Name=RosBREEDSNP_SNP_CT_12901428_Lg2_01552_MAF30_525812_exon2|organism=Malus x domestica|type=genetic_marker|length=70bp
TTGCAGGTGCTTTTGGGCCCTTTGGCTGGCTCCTTYTTCTTGGCCCTTGA
AAAATTGAATGCAATTATAC
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20132N/A21.95RosBREEDSNP_SNP_CT_12901428_Lg2_01552_MAF30_525812_exon2View
2Apple-M432-2013-physical-Malus-domestica2N/A12901428RosBREEDSNP_SNP_CT_12901428_Lg2_01552_MAF30_525812_exon2View
3Apple-BB-F12N/A34.33RosBREEDSNP_SNP_CT_12901428_Lg2_01552_MAF30_525812_exon2View
4Apple-NC-F12N/A24.96RosBREEDSNP_SNP_CT_12901428_Lg2_01552_MAF30_525812_exon2View
5Apple-NCZFBB-consensus2N/A28.52RosBREEDSNP_SNP_CT_12901428_Lg2_01552_MAF30_525812_exon2View
Alignments
Feature NameTypeLocationAnalysis
MDC017910.361 contig MDC017910.361:6033..6033. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr02 chromosome Chr02:11506269..11506269. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr02 chromosome Chr02:11506267..11506267. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation